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UniProtKB/Swiss-Prot entry P04268


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name TPM1_CHICK
Primary accession number P04268
Secondary accession numbers P02559 P08942 P18441 P18442 P49436 P49438 P49439 Q540N4
Integrated into Swiss-Prot on July 21, 1986
Sequence was last modified on August 13, 1987 (Sequence version 2)
Annotations were last modified on    November 4, 2008 (Entry version 74)
Name and origin of the protein
Protein name Tropomyosin alpha-1 chain
Synonyms Tropomyosin-1
Alpha-tropomyosin
Gene name
Name: TPM1
From
Gallus gallus (Chicken) [TaxID: 9031] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus.
Protein existence 1: Evidence at protein level;
References
[1]
PROTEIN SEQUENCE (ISOFORM 1).
PubMed=3997866 [NCBI, ExPASy, EBI, Israel, Japan]
Lau S.Y.M., Sanders C., Smillie L.B.;
"Amino acid sequence of chicken gizzard gamma-tropomyosin.";
J. Biol. Chem. 260:7257-7263(1985).
[2]
NUCLEOTIDE SEQUENCE (ISOFORM 1).
DOI=10.1093/nar/15.19.8105; PubMed=3671073 [NCBI, ExPASy, EBI, Israel, Japan]
Gooding C., Reinach F.C., Macleod A.R.;
"Complete nucleotide sequence of the fast-twitch isoform of chicken skeletal muscle alpha-tropomyosin.";
Nucleic Acids Res. 15:8105-8105(1987).
[3]
NUCLEOTIDE SEQUENCE (ISOFORMS 1; 2; 4; 5; 6 AND 7).
DOI=10.1016/0378-1119(91)90323-4; PubMed=1748294 [NCBI, ExPASy, EBI, Israel, Japan]
Lemonnier M., Balvay L., Mouly V., Libri D., Fiszman M.Y.;
"The chicken gene encoding the alpha isoform of tropomyosin of fast-twitch muscle fibers: organization, expression and identification of the major proteins synthesized.";
Gene 107:229-240(1991).
[4]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 4).
TISSUE=Body wall;
PubMed=7820856 [NCBI, ExPASy, EBI, Israel, Japan]
Fanning A.S., Wolenski J.S., Mooseker M.S., Izant J.G.;
"Differential regulation of skeletal muscle myosin-II and brush border myosin-I enzymology and mechanochemistry by bacterially produced tropomyosin isoforms.";
Cell Motil. Cytoskeleton 29:29-45(1994).
[5]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
TISSUE=Heart, and Skeletal muscle;
Denz C.R., Zajdel R.W., Dube S., Dube D.K.;
"Identification, characterization, and expression of a novel alpha-tropomyosin isoform in cardiac tissues in developing chicken.";
Submitted (SEP-2002) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [MRNA] OF 24-284 (ISOFORM 1).
PubMed=7128591 [NCBI, ExPASy, EBI, Israel, Japan]
McLeod A.R.;
"Distinct alpha-tropomyosin mRNA sequences in chicken skeletal muscle.";
Eur. J. Biochem. 126:293-297(1982).
[7]
NUCLEOTIDE SEQUENCE OF 189-213 (ISOFORM 4).
TISSUE=Muscle;
DOI=10.1093/nar/17.13.5400; PubMed=2762137 [NCBI, ExPASy, EBI, Israel, Japan]
Lemonnier M., Libri D., Fiszman M.Y.;
"Chick alpha tropomyosin gene contains three sets of mutually exclusive alternatively spliced exons.";
Nucleic Acids Res. 17:5400-5400(1989).
[8]
X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) OF 1-81.
DOI=10.1073/pnas.131219198; PubMed=11438684 [NCBI, ExPASy, EBI, Israel, Japan]
Brown J.H., Kim K.H., Jun G., Greenfield N.J., Dominguez R., Volkmann N., Hitchcock-DeGregori S.E., Cohen C.;
"Deciphering the design of the tropomyosin molecule.";
Proc. Natl. Acad. Sci. U.S.A. 98:8496-8501(2001).
Comments
  • FUNCTION: Binds to actin filaments in muscle and non-muscle cells. Plays a central role, in association with the troponin complex, in the calcium dependent regulation of vertebrate striated muscle contraction. Smooth muscle contraction is regulated by interaction with caldesmon. In non-muscle cells is implicated in stabilizing cytoskeleton actin filaments.
  • SUBUNIT: Heterodimer of an alpha and a beta chain.
  • SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton.
  • ALTERNATIVE PRODUCTS: 6 named isoforms [FASTA] produced by alternative splicing. Additional isoforms seem to exist.
    Name1
    SynonymsFast-twitch skeletal muscle, CTm7
    Isoform IDP04268-1
    This is the isoform sequence displayed in this entry.
    Name2
    SynonymsSmooth muscle
    Isoform IDP04268-2
    Features which should be applied to build the isoform sequence: VSP_006588, VSP_006590.
    Name4
    SynonymsFibroblast F1
    Isoform IDP04268-4
    Features which should be applied to build the isoform sequence: VSP_006589, VSP_006590.
    Name5
    SynonymsFibroblast F2
    Isoform IDP04268-5
    Features which should be applied to build the isoform sequence: VSP_006590.
    Name6
    SynonymsBrain major
    Isoform IDP04268-6
    Features which should be applied to build the isoform sequence: VSP_006587, VSP_006591.
    Name7
    SynonymsBrain minor
    Isoform IDP04268-7
    Features which should be applied to build the isoform sequence: VSP_006591.
  • DOMAIN: The molecule is in a coiled coil structure that is formed by 2 polypeptide chains. The sequence exhibits a prominent seven-residues periodicity.
  • SIMILARITY: Belongs to the tropomyosin family.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M32441; AAA48610.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57991; CAA41056.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57993; CAA41056.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57994; CAA41056.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57995; CAA41056.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M69144; AAA48577.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M69140; AAA48577.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M69142; AAA48577.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M69143; AAA48577.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X16090; CAA34217.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57991; CAA41059.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57993; CAA41059.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57994; CAA41059.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57996; CAA41059.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57991; CAA41058.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57993; CAA41058.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57994; CAA41058.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57996; CAA41058.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57991; CAA41057.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57993; CAA41057.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57994; CAA41057.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X57996; CAA41057.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY150210; AAN75276.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M36337; AAA65121.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M36336; AAA65120.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
J00910; AAA49113.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S24399; TMCHA.
S24400; TMCHS2.
S24401; S24401.
S24402; S24402.
RefSeq NP_990732.1; -.
UniGene Gga.4108
3D structure databases
PDB
1IC2; X-ray; 2.00 A; A/B/C/D=1-80.[ExPASy / RCSB / EBI]
PDBsum 1IC2; -.
SMR P04268; 1-284.
ModBase P04268.
Ontologies
GO
GO:0003779; Molecular function: actin binding (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR000533; Tropomyosin.
Graphical view of domain structure.
Pfam PF00261; Tropomyosin; 1.
Pfam graphical view of domain structure.
PRINTS PR00194; TROPOMYOSIN.
PROSITE PS00326; TROPOMYOSIN; 1.
BLOCKS P04268.
ProtoNet P04268.
Genome annotation databases
Ensembl ENSGALG00000003521; Gallus gallus. [Contig view]
GeneID 396366; -.
KEGG gga:396366; -.
Phylogenomic databases
HOVERGEN P04268; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Acetylation; Actin-binding; Alternative splicing; Coiled coil; Cytoplasm; Cytoskeleton; Direct protein sequencing; Muscle protein; Polymorphism.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   284  284     Tropomyosin alpha-1 chain. PRO_0000205625
COILED   1   284  284     By similarity. 
MOD_RES   1     1        N-acetylmethionine. 
VAR_SEQ   1    80        MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLE DELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATD -> MAALSSLEAVRKKIRSLQEQADAAEERAGKLQREVDQER ALREE (in isoform 6). VSP_006587
VAR_SEQ   42    80        ELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATD -> DIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAK (in isoform 2). VSP_006588
VAR_SEQ   189   212        KCAELEEELKTVTNNLKSLEAQAE -> QVRQLEEQLRIMDQTLKALMAAED (in isoform 4). VSP_006589
VAR_SEQ   258   284        DELYAQKLKYKAISEELDHALNDMTSI -> EKVAHAKEENLNMHQMLDQTLLELNNM (in isoform 2, isoform 4 and isoform 5). VSP_006590
VAR_SEQ   259   284        ELYAQKLKYKAISEELDHALNDMTSI -> QLYQQLEQNSRLTNELKLALNED (in isoform 6 and isoform 7). VSP_006591
VARIANT   171   171  1     I -> V. 
VARIANT   175   175  1     D -> E. 
CONFLICT   34    34        E -> D (in Ref. 1; AA sequence). 
CONFLICT   45    45        A -> S (in Ref. 1; AA sequence). 
CONFLICT   63    63        S -> A (in Ref. 1; AA sequence). 
CONFLICT   75    75        D -> E (in Ref. 1; AA sequence). 
CONFLICT   83    84        SE -> AD (in Ref. 1; AA sequence). 
CONFLICT   132   132        N -> S (in Ref. 1; AA sequence). 
CONFLICT   157   157        E -> D (in Ref. 1; AA sequence). 
CONFLICT   165   165        V -> A (in Ref. 2; AAA48610). 
CONFLICT   172   172        I -> L (in Ref. 1; AA sequence). 
CONFLICT   174   174        G -> S (in Ref. 1; AA sequence). 
CONFLICT   188   188        S -> G (in Ref. 1; AA sequence). 
CONFLICT   229   229        T -> S (in Ref. 1; AA sequence). 
HELIX   3    74  72      
HELIX   75    77  3      
Sequence information
Length: 284 AA [This is the length of the unprocessed precursor] Molecular weight: 32766 Da [This is the MW of the unprocessed precursor] CRC64: DBBBD3DB7F36DACB [This is a checksum on the sequence]
        10         20         30         40         50         60 
MDAIKKKMQM LKLDKENALD RAEQAEADKK AAEERSKQLE DELVALQKKL KGTEDELDKY 

        70         80         90        100        110        120 
SESLKDAQEK LELADKKATD AESEVASLNR RIQLVEEELD RAQERLATAL QKLEEAEKAA 

       130        140        150        160        170        180 
DESERGMKVI ENRAQKDEEK MEIQEIQLKE AKHIAEEADR KYEEVARKLV IIEGDLERAE 

       190        200        210        220        230        240 
ERAELSESKC AELEEELKTV TNNLKSLEAQ AEKYSQKEDK YEEEIKVLTD KLKEAETRAE 

       250        260        270        280 
FAERSVTKLE KSIDDLEDEL YAQKLKYKAI SEELDHALND MTSI 

P04268 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
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