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UniProtKB/Swiss-Prot entry P04187


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name GRAB_MOUSE
Primary accession number P04187
Secondary accession numbers None
Integrated into Swiss-Prot on March 20, 1987
Sequence was last modified on March 20, 1987 (Sequence version 1)
Annotations were last modified on    November 4, 2008 (Entry version 97)
Name and origin of the protein
Protein name Granzyme B(G,H) [Precursor]
Synonyms EC 3.4.21.79
Cytotoxic cell protease 1
CCP1
CTLA-1
Fragmentin-2
Gene name
Name: Gzmb
Synonyms: Ctla-1, Ctla1
From
Mus musculus (Mouse) [TaxID: 10090] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=3518058 [NCBI, ExPASy, EBI, Israel, Japan]
Lobe C.G., Finlay B.B., Paranchych W., Paetkau V.H., Bleackley R.C.;
"Novel serine proteases encoded by two cytotoxic T lymphocyte-specific genes.";
Science 232:858-861(1986).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
DOI=10.1021/bi00418a040; PubMed=3264185 [NCBI, ExPASy, EBI, Israel, Japan]
Lobe C.G., Upton C., Duggan B., Ehrman N., Letellier M., Bell J., McFadden G., Bleackley R.C.;
"Organization of two genes encoding cytotoxic T lymphocyte-specific serine proteases CCPI and CCPII.";
Biochemistry 27:6941-6946(1988).
[3]
NUCLEOTIDE SEQUENCE [MRNA].
DOI=10.1038/322268a0; PubMed=3090449 [NCBI, ExPASy, EBI, Israel, Japan]
Brunet J.F., Dosseto M., Denizot F., Mattei M.-G., Clark W.R., Haqqi T.M., Ferrier P., Nabholz M., Schmitt-Verhulst A.M., Luciani M.-F., Golstein P.;
"The inducible cytotoxic T-lymphocyte-associated gene transcript CTLA-1 sequence and gene localization to mouse chromosome 14.";
Nature 322:268-271(1986).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=FVB/N;
TISSUE=Mammary gland;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
NUCLEOTIDE SEQUENCE OF 227-247.
STRAIN=C57BL/6J;
DOI=10.1007/BF00356553; PubMed=8043949 [NCBI, ExPASy, EBI, Israel, Japan]
Ko M.S., Wang X., Horton J.H., Hagen M.D., Takahashi N., Maezaki Y., Nadeau J.H.;
"Genetic mapping of 40 cDNA clones on the mouse genome by PCR.";
Mamm. Genome 5:349-355(1994).
[6]
PROTEIN SEQUENCE OF 21-40.
DOI=10.1016/0092-8674(87)90544-7; PubMed=3555842 [NCBI, ExPASy, EBI, Israel, Japan]
Masson D., Tschopp J.;
"A family of serine esterases in lytic granules of cytolytic T lymphocytes.";
Cell 49:679-685(1987).
[7]
3D-STRUCTURE MODELING.
DOI=10.1002/prot.340040306; PubMed=3237717 [NCBI, ExPASy, EBI, Israel, Japan]
Murphy M.E.P., Moult J., Bleackley R.C., Gershenfeld H., Weissman I.L., James M.N.G.;
"Comparative molecular model building of two serine proteinases from cytotoxic T lymphocytes.";
Proteins 4:190-204(1988).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X04072; CAA27715.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M12302; AAA37383.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M22526; AAB61756.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC002085; AAH02085.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
U05707; AAB60470.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A94288; PRMSCL.
RefSeq NP_038570.1; -.
UniGene Mm.14874
3D structure databases
PDB
2CP1; Model; -; A=21-247.[ExPASy / RCSB / EBI]
PDBsum 2CP1; -.
SMR P04187; 21-245.
ModBase P04187.
Protein-protein interaction databases
DIP DIP:562N; -.
Protein family/group databases
MEROPS S01.136; -.
Organism-specific databases
MGI MGI:109267; Gzmb.
Gene expression databases
ArrayExpress P04187; -.
CleanEx MM_GZMB; -.
GermOnline ENSMUSG00000015437; Mus musculus.
Ontologies
GO
GO:0008233; Molecular function: peptidase activity (inferred from mutant phenotype from MGI).
GO:0005515; Molecular function: protein binding (inferred from physical interaction from MGI).
GO:0008626; Biological process: induction of apoptosis by granzyme (inferred from direct assay from MGI).
QuickGo view.
Family and domain databases
InterPro IPR001254; Peptidase_S1_S6.
IPR001314; Peptidase_S1A.
Graphical view of domain structure.
Pfam PF00089; Trypsin; 1.
Pfam graphical view of domain structure.
PRINTS PR00722; CHYMOTRYPSIN.
SMART SM00020; Tryp_SPc; 1.
SMART graphical view of domain structure.
PROSITE PS50240; TRYPSIN_DOM; 1.
PS00134; TRYPSIN_HIS; 1.
PS00135; TRYPSIN_SER; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS P04187.
ProtoNet P04187.
Genome annotation databases
Ensembl ENSMUSG00000015437; Mus musculus. [Contig view]
GeneID 14939; -.
KEGG mmu:14939; -.
Phylogenomic databases
HOGENOM P04187; -.
HOVERGEN P04187; -.
Other
NextBio 287263; -.
SOURCE Gzmb; Mus musculus.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Apoptosis; Cytolysis; Direct protein sequencing; Glycoprotein; Hydrolase; Protease; Serine protease; Signal; Zymogen.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    18  18      
PROPEP   19    20  2     Activation peptide. PRO_0000027401
CHAIN   21   247  227     Granzyme B(G,H). PRO_0000027402
DOMAIN   21   245  225     Peptidase S1. 
ACT_SITE   64    64        Charge relay system (By similarity). 
ACT_SITE   108   108        Charge relay system (By similarity). 
ACT_SITE   203   203        Charge relay system (By similarity). 
CARBOHYD   71    71        N-linked (GlcNAc...) (Potential). 
CARBOHYD   182   182        N-linked (GlcNAc...) (Potential). 
DISULFID   49    65        By similarity. 
DISULFID   142   209        By similarity. 
DISULFID   173   188        By similarity. 
STRAND   35    41  7      
STRAND   43    55  13      
STRAND   58    61  4      
HELIX   63    65  3      
STRAND   68    75  8      
STRAND   87    96  10      
TURN   102   104  3      
STRAND   110   116  7      
STRAND   141   147  7      
STRAND   149   151  3      
STRAND   154   156  3      
STRAND   161   168  8      
HELIX   170   174  5      
TURN   175   177  3      
HELIX   178   180  3      
HELIX   183   185  3      
STRAND   186   189  4      
TURN   200   204  5      
STRAND   206   209  4      
STRAND   212   219  8      
STRAND   228   232  5      
HELIX   233   245  13      
Sequence information
Length: 247 AA [This is the length of the unprocessed precursor] Molecular weight: 27470 Da [This is the MW of the unprocessed precursor] CRC64: 996BCD199965C6D6 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MKILLLLLTL SLASRTKAGE IIGGHEVKPH SRPYMALLSI KDQQPEAICG GFLIREDFVL 

        70         80         90        100        110        120 
TAAHCEGSII NVTLGAHNIK EQEKTQQVIP MVKCIPHPDY NPKTFSNDIM LLKLKSKAKR 

       130        140        150        160        170        180 
TRAVRPLNLP RRNVNVKPGD VCYVAGWGRM APMGKYSNTL QEVELTVQKD RECESYFKNR 

       190        200        210        220        230        240 
YNKTNQICAG DPKTKRASFR GDSGGPLVCK KVAAGIVSYG YKDGSPPRAF TKVSSFLSWI 


KKTMKSS 

P04187 in FASTA format

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