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UniProtKB/Swiss-Prot entry P03957


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name MMP3_RAT
Primary accession number P03957
Secondary accession numbers None
Integrated into Swiss-Prot on October 23, 1986
Sequence was last modified on October 23, 1986 (Sequence version 1)
Annotations were last modified on    November 4, 2008 (Entry version 91)
Name and origin of the protein
Protein name Stromelysin-1 [Precursor]
Synonyms SL-1
EC 3.4.24.17
Matrix metalloproteinase-3
MMP-3
Transin-1
PTR1 protein
Gene name
Name: Mmp3
From
Rattus norvegicus (Rat) [TaxID: 10116] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=3875482 [NCBI, ExPASy, EBI, Israel, Japan]
Matrisian L.M., Glaichenhaus N., Gesnel M.-C., Breathnach R.;
"Epidermal growth factor and oncogenes induce transcription of the same cellular mRNA in rat fibroblasts.";
EMBO J. 4:1435-1440(1985).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=2431284 [NCBI, ExPASy, EBI, Israel, Japan]
Matrisian L.M., Gleroy P., Ruhlmann C., Gesnel M.-C., Breathnach R.;
"Isolation of the oncogene and epidermal growth factor-induced transin gene: complex control in rat fibroblasts.";
Mol. Cell. Biol. 6:1679-1686(1986).
[3]
PROTEIN SEQUENCE OF 19-28; 110-119; 309-315 AND 316-325.
PubMed=1963430 [NCBI, ExPASy, EBI, Israel, Japan]
Umenishi F., Yasumitsu H., Ashida Y., Yamauti J., Umeda M., Miyazaki K.;
"Purification and properties of extracellular matrix-degrading metallo-proteinase overproduced by Rous sarcoma virus-transformed rat liver cell line, and its identification as transin.";
J. Biochem. 108:537-543(1990).
[4]
MUTAGENESIS, AND CHARACTERIZATION.
PubMed=2841336 [NCBI, ExPASy, EBI, Israel, Japan]
Sanchez-Lopez R., Nicholson R., Gesnel M.-C., Matrisian L.M., Breathnach R.;
"Structure-function relationships in the collagenase family member transin.";
J. Biol. Chem. 263:11892-11899(1988).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X02601; CAA26448.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A00997; KCRTIH.
RefSeq NP_598207.1; -.
UniGene Rn.32086
3D structure databases
HSSP P08254; 1HY7. [HSSP ENTRY / PDB]
ModBase P03957.
Protein family/group databases
MEROPS M10.011; -.
Organism-specific databases
RGD 621317; Mmp3.
Gene expression databases
ArrayExpress P03957; -.
GermOnline ENSRNOG00000032626; Rattus norvegicus.
Ontologies
GO
GO:0005509; Molecular function: calcium ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0008270; Molecular function: zinc ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0030574; Biological process: collagen catabolic process (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR000585; Hemopexin.
IPR001818; Pept_M10A_M12B.
IPR016293; Pept_M10A_matrix.
IPR006025; Pept_M_Zn_BS.
IPR006026; Peptidase_M.
IPR002477; Peptidoglycan-bd-like.
Graphical view of domain structure.
Gene3D G3DSA:2.110.10.10; Hemopexin; 1.
Pfam PF00045; Hemopexin; 4.
PF00413; Peptidase_M10; 1.
PF01471; PG_binding_1; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF001191; Peptidase_M10A_matrix; 1.
PRINTS PR00138; MATRIXIN.
SMART SM00120; HX; 4.
SM00235; ZnMc; 1.
SMART graphical view of domain structure.
PROSITE PS00546; CYSTEINE_SWITCH; 1.
PS00024; HEMOPEXIN; 1.
PS00142; ZINC_PROTEASE; 1.
BLOCKS P03957.
ProtoNet P03957.
Genome annotation databases
Ensembl ENSRNOG00000032626; Rattus norvegicus. [Contig view]
GeneID 171045; -.
KEGG rno:171045; -.
Phylogenomic databases
HOVERGEN P03957; -.
Other
NextBio 621565; -.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Calcium; Collagen degradation; Direct protein sequencing; Extracellular matrix; Glycoprotein; Hydrolase; Metal-binding; Metalloprotease; Protease; Repeat; Secreted; Signal; Zinc; Zymogen.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    17  17     Probable. 
PROPEP   18    97  80     Activation peptide. PRO_0000028734
CHAIN   98   475  378     Stromelysin-1. PRO_0000028735
DOMAIN   294   336  43     Hemopexin-like 1. 
DOMAIN   338   381  44     Hemopexin-like 2. 
DOMAIN   386   433  48     Hemopexin-like 3. 
DOMAIN   435   475  41     Hemopexin-like 4. 
MOTIF   88    95  8     Cysteine switch (By similarity). 
ACT_SITE   217   217         
METAL   90    90        Zinc 2; in inhibited form (By similarity). 
METAL   122   122        Calcium 1 (By similarity). 
METAL   156   156        Calcium 2 (By similarity). 
METAL   166   166        Zinc 1 (By similarity). 
METAL   168   168        Zinc 1 (By similarity). 
METAL   173   173        Calcium 3 (By similarity). 
METAL   174   174        Calcium 3; via carbonyl oxygen (By similarity). 
METAL   176   176        Calcium 3; via carbonyl oxygen (By similarity). 
METAL   178   178        Calcium 3; via carbonyl oxygen (By similarity). 
METAL   181   181        Zinc 1 (By similarity). 
METAL   188   188        Calcium 2; via carbonyl oxygen (By similarity). 
METAL   190   190        Calcium 2; via carbonyl oxygen (By similarity). 
METAL   192   192        Calcium 2 (By similarity). 
METAL   194   194        Zinc 1 (By similarity). 
METAL   196   196        Calcium 3 (By similarity). 
METAL   197   197        Calcium 1 (By similarity). 
METAL   199   199        Calcium 1 (By similarity). 
METAL   199   199        Calcium 3 (By similarity). 
METAL   216   216        Zinc 2; catalytic (By similarity). 
METAL   220   220        Zinc 2; catalytic (By similarity). 
METAL   226   226        Zinc 2; catalytic (By similarity). 
METAL   295   295        Calcium 4; via carbonyl oxygen (By similarity). 
METAL   387   387        Calcium 4; via carbonyl oxygen (By similarity). 
METAL   436   436        Calcium 4; via carbonyl oxygen (By similarity). 
CARBOHYD   118   118        N-linked (GlcNAc...) (Potential). 
DISULFID   288   475        By similarity. 
Sequence information
Length: 475 AA [This is the length of the unprocessed precursor] Molecular weight: 53428 Da [This is the MW of the unprocessed precursor] CRC64: D81239DC3E26782E [This is a checksum on the sequence]
        10         20         30         40         50         60 
MKGLPVLLWL CTAVCSSYPL HGSEEDAGME VLQKYLENYY GLEKDVKQFT KKKDSSPVVK 

        70         80         90        100        110        120 
KIQEMQKFLG LKMTGKLDSN TMELMHKPRC GVPDVGGFST FPGSPKWRKN HISYRIVNYT 

       130        140        150        160        170        180 
LDLPRESVDS AIERALKVWE EVTPLTFSRI SEGEADIMIS FAVEEHGDFI PFDGPGMVLA 

       190        200        210        220        230        240 
HAYAPGPGTN GDAHFDDDER WTDDVTGTNL FLVAAHELGH SLGLFHSANA EALMYPVYKS 

       250        260        270        280        290        300 
STDLARFHLS QDDVDGIQSL YGPPTESPDV LVVPTKSNSL DPETLPMCSS ALSFDAVSTL 

       310        320        330        340        350        360 
RGEVLFFKDR HFWRKSLRTP EPGFYLISSF WPSLPSNMDA AYEVTNRDTV FILKGNQIWA 

       370        380        390        400        410        420 
IRGHEELAGY PKSIHTLGLP ETVQKIDAAI SLKDQKKTYF FVEDKFWRFD EKKQSMDPEF 

       430        440        450        460        470 
PRKIAENFPG IGTKVDAVFE AFGFLYFFSG SSQLEFDPNA GKVTHILKSN SWFNC 

P03957 in FASTA format

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