ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry P02678


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name FIBB_PETMA
Primary accession number P02678
Secondary accession numbers None
Integrated into Swiss-Prot on July 21, 1986
Sequence was last modified on October 1, 1989 (Sequence version 2)
Annotations were last modified on    July 22, 2008 (Entry version 62)
Name and origin of the protein
Protein name Fibrinogen beta chain [Fragments]
Synonyms None
Contains Fibrinopeptide B
Gene name None
From
Petromyzon marinus (Sea lamprey) [TaxID: 7757] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon.
Protein existence 1: Evidence at protein level;
References
[1]
PROTEIN SEQUENCE OF 1-36.
DOI=10.1016/0005-2795(76)90138-0; PubMed=999898 [NCBI, ExPASy, EBI, Israel, Japan]
Cottrell B.A., Doolittle R.F.;
"Amino acid sequences of lamprey fibrinopeptides A and B and characterizations of the junctions split by lamprey and mammalian thrombins.";
Biochim. Biophys. Acta 453:426-438(1976).
[2]
NUCLEOTIDE SEQUENCE [MRNA] OF 37-477.
DOI=10.1021/bi00369a026; PubMed=3790537 [NCBI, ExPASy, EBI, Israel, Japan]
Bohonus V.L., Doolittle R.F., Pontes M., Strong D.D.;
"Complementary DNA sequence of lamprey fibrinogen beta chain.";
Biochemistry 25:6512-6516(1986).
[3]
X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF 155-477.
DOI=10.1021/bi020299t; PubMed=12162736 [NCBI, ExPASy, EBI, Israel, Japan]
Yang Z., Spraggon G., Pandi L., Everse S.J., Riley M., Doolittle R.F.;
"Crystal structure of fragment D from lamprey fibrinogen complexed with the peptide Gly-His-Arg-Pro-amide.";
Biochemistry 41:10218-10224(2002).
[4]
X-RAY CRYSTALLOGRAPHY (2.9 ANGSTROMS) OF 155-477.
DOI=10.1021/bi026666i; PubMed=12501189 [NCBI, ExPASy, EBI, Israel, Japan]
Yang Z., Pandi L., Doolittle R.F.;
"The crystal structure of fragment double-D from cross-linked lamprey fibrin reveals isopeptide linkages across an unexpected D-D interface.";
Biochemistry 41:15610-15617(2002).
Comments
  • FUNCTION: Fibrinogen has a double function: yielding monomers that polymerize into fibrin and acting as a cofactor in platelet aggregation.
  • SUBUNIT: Heterohexamer; disulfide linked. Contains 2 sets of 3 non-identical chains (alpha, beta and gamma). The 2 heterotrimers are in head to head conformation with the N-termini in a small central domain (By similarity).
  • SUBCELLULAR LOCATION: Secreted.
  • DOMAIN: A long coiled coil structure formed by 3 polypeptide chains connects the central nodule to the C-terminal domains (distal nodules). The long C-terminal ends of the alpha chains fold back, contributing a fourth strand to the coiled coil structure.
  • PTM: Conversion of fibrinogen to fibrin is triggered by thrombin, which cleaves fibrinopeptides A and B from alpha and beta chains, and thus exposes the N-terminal polymerization sites responsible for the formation of the soft clot. The soft clot is converted into the hard clot by factor XIIIA which catalyzes the epsilon-(gamma-glutamyl)lysine cross-linking between gamma chains (stronger) and between alpha chains (weaker) of different monomers.
  • SIMILARITY: Contains 1 fibrinogen C-terminal domain.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M14773; AAA49261.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A25052; A25052.
3D structure databases
PDB
1LWU; X-ray; 2.80 A; B/E/H/K=155-477.[ExPASy / RCSB / EBI]
1N73; X-ray; 2.90 A; B/E=155-477.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1LWU; -.
1N73; -.
ModBase P02678.
Family and domain databases
InterPro IPR002181; Fibrinogen_a/b/g_C.
IPR014716; Fibrinogen_a/b/g_C_1.
IPR014715; Fibrinogen_a/b/g_C_2.
IPR012290; Fibrinogen_a/b/g_coil.
Graphical view of domain structure.
Gene3D G3DSA:3.90.215.10; Fibrinogen_a/b/g_C_1; 1.
G3DSA:4.10.530.10; Fibrinogen_a/b/g_C_2; 1.
G3DSA:1.20.5.50; Fibrinogen_a/b/g_coil; 1.
Pfam PF00147; Fibrinogen_C; 1.
Pfam graphical view of domain structure.
SMART SM00186; FBG; 1.
SMART graphical view of domain structure.
PROSITE PS00514; FIBRIN_AG_C_DOMAIN; 1.
BLOCKS P02678.
Phylogenomic databases
HOVERGEN P02678; -.
Other
ProtoNet P02678.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Blood coagulation; Coiled coil; Direct protein sequencing; Glycoprotein; Secreted; Sulfation.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
PEPTIDE   1    36  36     Fibrinopeptide B. PRO_0000009096
CHAIN   <37   477  >441     Fibrinogen beta chain. PRO_0000009097
MOD_RES   13    13        Sulfotyrosine. 
CARBOHYD   27    27        N-linked (GlcNAc...). 
DISULFID   84    84        Interchain (with alpha chain) (By similarity). 
DISULFID   95    95        Interchain (with alpha chain) (By similarity). 
DISULFID   99    99        Interchain (with gamma chain) (By similarity). 
DISULFID   212   212        Interchain (with alpha chain) (By similarity). 
DISULFID   216   216        Interchain (with gamma chain) (By similarity). 
DISULFID   220   304        By similarity. 
DISULFID   230   259        By similarity. 
DISULFID   412   425        By similarity. 
NON_CONS   36    37         
HELIX   162   168  7      
HELIX   170   177  8      
TURN   178   180  3      
HELIX   181   188  8      
HELIX   190   210  21      
STRAND   213   215  3      
STRAND   222   224  3      
STRAND   227   229  3      
HELIX   230   235  6      
STRAND   242   246  5      
STRAND   255   260  6      
HELIX   263   265  3      
STRAND   268   277  10      
HELIX   285   290  6      
STRAND   291   293  3      
STRAND   295   297  3      
STRAND   300   302  3      
STRAND   310   312  3      
HELIX   314   323  10      
STRAND   326   333  8      
STRAND   339   347  9      
HELIX   352   354  3      
STRAND   365   367  3      
HELIX   370   373  4      
HELIX   381   384  4      
STRAND   401   403  3      
TURN   412   417  6      
STRAND   423   425  3      
STRAND   427   429  3      
TURN   442   444  3      
STRAND   452   455  4      
HELIX   456   459  4      
STRAND   466   473  8      
Sequence information
Length: 477 AA [This is the length of the partial sequence of the unprocessed precursor] Molecular weight: 54270 Da [This is the MW of the partial sequence of the unprocessed precursor] CRC64: B8A95E7E32D09D18 [This is a checksum on the sequence]
        10         20         30         40         50         60 
EDLSLVGQPE NDYDTGDDBT AADPDSNNTA AALDVRRPLP SGTRVRRPPL RHRRLAPGAV 

        70         80         90        100        110        120 
MSRDPPASPR PQEAQKAIRD EGGCMLPESD LGVLCPTGCE LREELLKQRD PVRYKISMLK 

       130        140        150        160        170        180 
QNLTYFINSF DRMASDSNTL KQNVQTLRRR LNSRSSTHVN AQKEIENRYK EVKIRIESTV 

       190        200        210        220        230        240 
AGSLRSMKSV LEHLRAKMQR MEEAIKTQKE LCSAPCTVNC RVPVVSGMHC EDIYRNGGRT 

       250        260        270        280        290        300 
SEAYYIQPDL FSEPYKVFCD MESHGGGWTV VQNRVDGSSN FARDWNTYKA EFGNIAFGNG 

       310        320        330        340        350        360 
KSICNIPGEY WLGTKTVHQL TKQHTQQVLF DMSDWEGSSV YAQYASFRPE NEAQGYRLWV 

       370        380        390        400        410        420 
EDYSGNAGNA LLEGATQLMG DNRTMTIHNG MQFSTFDRDN DNWNPGDPTK HCSREDAGGW 

       430        440        450        460        470 
WYNRCHAANP NGRYYWGGIY TKEQADYGTD DGVVWMNWKG SWYSMRQMAM KLRPKWP 

P02678 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
 Hosted by ch flag SIB Switzerland Mirror sites: Australia  Brazil  Canada  China  Korea
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!