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UniProtKB/Swiss-Prot entry P02676


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name FIBB_BOVIN
Primary accession number P02676
Secondary accession numbers None
Integrated into Swiss-Prot on July 21, 1986
Sequence was last modified on February 1, 1996 (Sequence version 2)
Annotations were last modified on    November 4, 2008 (Entry version 75)
Name and origin of the protein
Protein name Fibrinogen beta chain [Precursor]
Synonyms None
Contains Fibrinopeptide B
Gene name
Name: FGB
From
Bos taurus (Bovine) [TaxID: 9913] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos.
Protein existence 1: Evidence at protein level;
References
[1]
PROTEIN SEQUENCE OF 1-4.
Blombaeck B., Doolittle R.F.;
"The sequence of amino acids at the N-terminal end of bovine fibrinopeptide B.";
Acta Chem. Scand. 17:1816-1819(1963).
[2]
PROTEIN SEQUENCE OF 5-21.
Sjoquist J., Blombaeck B., Wallen P.;
"Amino acid sequence of bovine fibrinopeptides.";
Ark. Kemi 16:425-436(1960).
[3]
PROTEIN SEQUENCE OF 22-53.
DOI=10.1016/0003-9861(79)90068-7; PubMed=434821 [NCBI, ExPASy, EBI, Israel, Japan]
Martinelli R.A., Inglis A.S., Rubira M.R., Hageman T.C., Hurrell J.G.R., Leach S.J., Scheraga H.A.;
"Amino acid sequences of portions of the alpha and beta chains of bovine fibrinogen.";
Arch. Biochem. Biophys. 192:27-32(1979).
[4]
NUCLEOTIDE SEQUENCE [MRNA] OF 44-468.
PubMed=6262803 [NCBI, ExPASy, EBI, Israel, Japan]
Chung D.W., Rixon M.W., McGillivray R.T.A., Davie E.W.;
"Characterization of a cDNA clone coding for the beta chain of bovine fibrinogen.";
Proc. Natl. Acad. Sci. U.S.A. 78:1466-1470(1981).
[5]
X-RAY CRYSTALLOGRAPHY (3.5 ANGSTROMS) OF 61-468.
DOI=10.1016/0022-2836(91)90739-S; PubMed=1942070 [NCBI, ExPASy, EBI, Israel, Japan]
Rao S.P., Poojary M.D., Elliott B.W. Jr., Melanson L.A., Oriel B., Cohen C.;
"Fibrinogen structure in projection at 18 A resolution. Electron density by co-ordinated cryo-electron microscopy and X-ray crystallography.";
J. Mol. Biol. 222:89-98(1991).
[6]
X-RAY CRYSTALLOGRAPHY (1.4 ANGSTROMS) OF 61-116.
DOI=10.1073/pnas.211439798; PubMed=11593005 [NCBI, ExPASy, EBI, Israel, Japan]
Madrazo J., Brown J.H., Litvinovich S., Dominguez R., Yakovlev S., Medved L., Cohen C.;
"Crystal structure of the central region of bovine fibrinogen (E5 fragment) at 1.4-A resolution.";
Proc. Natl. Acad. Sci. U.S.A. 98:11967-11972(2001).
Comments
  • FUNCTION: Fibrinogen has a double function: yielding monomers that polymerize into fibrin and acting as a cofactor in platelet aggregation.
  • SUBUNIT: Heterohexamer; disulfide linked. Contains 2 sets of 3 non-identical chains (alpha, beta and gamma). The 2 heterotrimers are in head to head conformation with the N-termini in a small central domain (By similarity).
  • SUBCELLULAR LOCATION: Secreted.
  • DOMAIN: A long coiled coil structure formed by 3 polypeptide chains connects the central nodule to the C-terminal domains (distal nodules). The long C-terminal ends of the alpha chains fold back, contributing a fourth strand to the coiled coil structure.
  • PTM: Conversion of fibrinogen to fibrin is triggered by thrombin, which cleaves fibrinopeptides A and B from alpha and beta chains, and thus exposes the N-terminal polymerization sites responsible for the formation of the soft clot. The soft clot is converted into the hard clot by factor XIIIA which catalyzes the epsilon-(gamma-glutamyl)lysine cross-linking between gamma chains (stronger) and between alpha chains (weaker) of different monomers.
  • SIMILARITY: Contains 1 fibrinogen C-terminal domain.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
V00110; CAA23444.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A03122; FGBOB.
S69115; S69115.
UniGene Bt.23917
3D structure databases
PDB
1DEQ; X-ray; 3.50 A; B/E/O/R=61-468.[ExPASy / RCSB / EBI]
1JY2; X-ray; 1.40 A; O/R=61-116.[ExPASy / RCSB / EBI]
1JY3; X-ray; 1.60 A; O/R=61-116.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1DEQ; -.
1JY2; -.
1JY3; -.
ModBase P02676.
Family and domain databases
InterPro IPR002181; Fibrinogen_a/b/g_C.
IPR014716; Fibrinogen_a/b/g_C_1.
IPR014715; Fibrinogen_a/b/g_C_2.
IPR012290; Fibrinogen_a/b/g_coil.
Graphical view of domain structure.
Gene3D G3DSA:3.90.215.10; Fibrinogen_a/b/g_C_1; 1.
G3DSA:4.10.530.10; Fibrinogen_a/b/g_C_2; 1.
G3DSA:1.20.5.50; Fibrinogen_a/b/g_coil; 1.
Pfam PF00147; Fibrinogen_C; 1.
Pfam graphical view of domain structure.
SMART SM00186; FBG; 1.
SMART graphical view of domain structure.
PROSITE PS00514; FIBRINOGEN_C_1; 1.
PS51406; FIBRINOGEN_C_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS P02676.
ProtoNet P02676.
Genome annotation databases
Ensembl ENSBTAG00000022120; Bos taurus. [Contig view]
Phylogenomic databases
HOVERGEN P02676; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Blood coagulation; Coiled coil; Direct protein sequencing; Glycoprotein; Pyrrolidone carboxylic acid; Secreted; Sulfation.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
PEPTIDE   1    21  21     Fibrinopeptide B. PRO_0000009055
CHAIN   22   468  447     Fibrinogen beta chain. PRO_0000009056
DOMAIN   209   465  257     Fibrinogen C-terminal. 
COILED   88   204  117      
SITE   21    22  2     Cleavage; by thrombin; to release fibrinopeptide B. 
MOD_RES   1     1        Pyrrolidone carboxylic acid. 
MOD_RES   6     6        Sulfotyrosine. 
CARBOHYD   371   371        N-linked (GlcNAc...) (Probable). 
DISULFID   72    72        Interchain (with C-58 in alpha chain). 
DISULFID   83    83        Interchain (with C-71 in alpha chain). 
DISULFID   87    87        Interchain (with C-43 in gamma chain). 
DISULFID   200   200        Interchain (with C-187 in alpha chain). 
DISULFID   204   204        Interchain (with C-159 in gamma chain). 
DISULFID   208   293        By similarity. 
DISULFID   218   247        By similarity. 
DISULFID   401   414        By similarity. 
TURN   77    79  3      
STRAND   81    84  4      
HELIX   86   112  27      
Sequence information
Length: 468 AA [This is the length of the unprocessed precursor] Molecular weight: 53340 Da [This is the MW of the unprocessed precursor] CRC64: 2DED42F443AA4B37 [This is a checksum on the sequence]
        10         20         30         40         50         60 
QFPTDYDEGQ DDRPKVGLGA RGHRPYDKKK EEAPSLRPVP PPISGGGYRA RPATATVGQK 

        70         80         90        100        110        120 
KVERKPPDAD GCLHADPDLG VLCPTGCKLQ DTLVRQERPI RKSIEDLRNT VDSVSRTSSS 

       130        140        150        160        170        180 
TFQYITLLKN MWKGRQNQVQ DNENVVNEYS SHLEKHQLYI DETVKNNIPT KLRVLRSILE 

       190        200        210        220        230        240 
NLRSKIQKLE SDVSTQMEYC RTPCTVTCNI PVVSGKECEK IIRNEGETSE MYLIQPEDSS 

       250        260        270        280        290        300 
KPYRVYCDMK TEKGGWTVIQ NRQDGSVDFG RKWDPYKQGF GNIATNAEGK KYCGVPGEYW 

       310        320        330        340        350        360 
LGNDRISQLT NMGPTKLLIE MEDWKGDKVT ALYEGFTVQN EANKYQLSVS KYKGTAGNAL 

       370        380        390        400        410        420 
IEGASQLVGE NRTMTIHNSM FFSTYDRDND GWKTTDPRKQ CSKEDGGGWW YNRCHAANPN 

       430        440        450        460 
GRYYWGGAYT WDMAKHGTDD GVVWMNWQGS WYSMKKMSMK IRPYFPEQ 

P02676 in FASTA format

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