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UniProtKB/Swiss-Prot entry P00966


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name ASSY_HUMAN
Primary accession number P00966
Secondary accession numbers Q6LDL2 Q86UZ0 Q96GT4
Integrated into Swiss-Prot on July 21, 1986
Sequence was last modified on April 3, 2002 (Sequence version 2)
Annotations were last modified on    November 4, 2008 (Entry version 106)
Name and origin of the protein
Protein name Argininosuccinate synthase
Synonyms EC 6.3.4.5
Citrulline--aspartate ligase
Gene name
Name: ASS1
Synonyms: ASS
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
DOI=10.1093/nar/11.18.6505; PubMed=6194510 [NCBI, ExPASy, EBI, Israel, Japan]
Bock H.-G.O., Su T.-S., O'Brien W.E., Beaudet A.L.;
"Sequence for human argininosuccinate synthetase cDNA.";
Nucleic Acids Res. 11:6505-6512(1983).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=6321498 [NCBI, ExPASy, EBI, Israel, Japan]
Freytag S.O., Bock H.-G.O., Beaudet A.L., O'Brien W.E.;
"Molecular structures of human argininosuccinate synthetase pseudogenes. Evolutionary and mechanistic implications.";
J. Biol. Chem. 259:3160-3166(1984).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANTS CTLN1 LEU-108; ARG-179; VAL-362 AND ARG-390.
DOI=10.1007/s00439-002-0686-6; PubMed=11941481 [NCBI, ExPASy, EBI, Israel, Japan]
Haeberle J., Pauli S., Linnebank M., Kleijer W.J., Bakker H.D., Wanders R.J.A., Harms E., Koch H.G.;
"Structure of the human argininosuccinate synthetase gene and an improved system for molecular diagnostics in patients with classical and mild citrullinemia.";
Hum. Genet. 110:327-333(2002).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Small intestine;
DOI=10.1038/ng1285; PubMed=14702039 [NCBI, ExPASy, EBI, Israel, Japan]
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human cDNAs.";
Nat. Genet. 36:40-45(2004).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Kidney, and Muscle;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[6]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-24.
DOI=10.1007/BF01819307; PubMed=3027451 [NCBI, ExPASy, EBI, Israel, Japan]
Jinno Y., Nomiyama H., Matuo S., Shimada K., Matsuda I., Saheki T.;
"Structure of the 5' end region of the human argininosuccinate synthetase gene.";
J. Inherit. Metab. Dis. 8:157-159(1985).
[7]
PROTEIN SEQUENCE OF 148-161.
PubMed=2788888 [NCBI, ExPASy, EBI, Israel, Japan]
Isashiki Y., Noda T., Kobayashi K., Sase M., Saheki T., Titani K.;
"Identification of essential arginine residue(s) for Mg-ATP binding of human argininosuccinate synthetase.";
Protein Seq. Data Anal. 2:283-287(1989).
[8]
PROTEIN SEQUENCE OF 200-209.
TISSUE=Colon carcinoma;
DOI=10.1002/elps.1150180344; PubMed=9150948 [NCBI, ExPASy, EBI, Israel, Japan]
Ji H., Reid G.E., Moritz R.L., Eddes J.S., Burgess A.W., Simpson R.J.;
"A two-dimensional gel database of human colon carcinoma proteins.";
Electrophoresis 18:605-613(1997).
[9]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-352, AND MASS SPECTROMETRY.
DOI=10.2116/analsci.24.161; PubMed=18187866 [NCBI, ExPASy, EBI, Israel, Japan]
Imami K., Sugiyama N., Kyono Y., Tomita M., Ishihama Y.;
"Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column.";
Anal. Sci. 24:161-166(2008).
[10]
VARIANTS CTLN1 SER-14; HIS-157; ASN-180; TRP-304; SER-324; TRP-363 AND ARG-390.
PubMed=2358466 [NCBI, ExPASy, EBI, Israel, Japan]
Kobayashi K., Jackson M.J., Tick D.B., O'Brien W.E., Beaudet A.L.;
"Heterogeneity of mutations in argininosuccinate synthetase causing human citrullinemia.";
J. Biol. Chem. 265:11361-11367(1990).
[11]
VARIANTS CTLN1 LEU-18 AND CYS-86.
PubMed=1943692 [NCBI, ExPASy, EBI, Israel, Japan]
Kobayashi K., Rosenbloom C., Beaudet A.L., O'Brien W.E.;
"Additional mutations in argininosuccinate synthetase causing citrullinemia.";
Mol. Biol. Med. 8:95-100(1991).
[12]
VARIANTS CTLN1 THR-118; VAL-192; CYS-272; ARG-280; TRP-304 AND LEU-363.
PubMed=7977368 [NCBI, ExPASy, EBI, Israel, Japan]
Kobayashi K., Shaheen N., Terazono H., Saheki T.;
"Mutations in argininosuccinate synthetase mRNA of Japanese patients, causing classical citrullinemia.";
Am. J. Hum. Genet. 55:1103-1112(1994).
[13]
CHARACTERIZATION OF SOME CTLN1 VARIANTS.
PubMed=8792870 [NCBI, ExPASy, EBI, Israel, Japan]
Shaheen N., Kobayashi K., Terazono H., Fukushige T., Horiuchi M., Saheki T.;
"Characterization of human wild-type and mutant argininosuccinate synthetase proteins expressed in bacterial cells.";
Enzyme Protein 48:251-264(1995).
[14]
VARIANTS CTLN1 ALA-69; LEU-108; ASP-117; ILE-119; GLN-270 AND ARG-390.
DOI=10.1006/mgme.2001.3221; PubMed=11708871 [NCBI, ExPASy, EBI, Israel, Japan]
Vilaseca M.A., Kobayashi K., Briones P., Lambruschini N., Campistol J., Tabata A., Alomar A., Rodes M., Lluch M., Saheki T.;
"Phenotype and genotype heterogeneity in Mediterranean citrullinemia.";
Mol. Genet. Metab. 74:396-398(2001).
[15]
VARIANTS CTLN1 ARG-19; HIS-86; SER-95; SER-96; ASP-117; SER-117; CYS-157; ARG-179; LYS-191; HIS-265; MET-269; CYS-272; LYS-283; TRP-304; GLN-310; SER-324; VAL-362; GLN-363; TRP-363; ILE-389 AND ARG-390.
DOI=10.1002/humu.10230; PubMed=12815590 [NCBI, ExPASy, EBI, Israel, Japan]
Gao H.-Z., Kobayashi K., Tabata A., Tsuge H., Iijima M., Yasuda T., Kalkanoglu H.S., Dursun A., Tokatli A., Coskun T., Trefz F.K., Skladal D., Mandel H., Seidel J., Kodama S., Shirane S., Ichida T., Makino S., Yoshino M., Kang J.-H., Mizuguchi M., Barshop B.A., Fuchinoue S., Seneca S., Zeesman S., Knerr I., Rodes M., Wasant P., Yoshida I., De Meirleir L., Abdul Jalil M., Begum L., Horiuchi M., Katunuma N., Nakagawa S., Saheki T.;
"Identification of 16 novel mutations in the argininosuccinate synthetase gene and genotype-phenotype correlation in 38 classical citrullinemia patients.";
Hum. Mutat. 22:24-34(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X01630; CAA25771.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
L00084; AAA51783.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
L00079; AAA51783.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
L00080; AAA51783.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
L00081; AAA51783.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
L00082; AAA51783.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
L00083; AAA51783.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY034076; AAK67487.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK027126; -; NOT_ANNOTATED_CDS; mRNA.[EMBL / GenBank / DDBJ]
BC009243; AAH09243.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC021676; AAH21676.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC052288; AAH52288.1; ALT_INIT; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M34903; AAA51782.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A01195; AJHURS.
RefSeq NP_000041.2; -.
NP_446464.1; -.
UniGene Hs.160786
3D structure databases
PDB
2NZ2; X-ray; 2.40 A; A=1-412.[ExPASy / RCSB / EBI]
PDBsum 2NZ2; -.
ModBase P00966.
Protein-protein interaction databases
IntAct P00966; -.
PTM databases
PhosphoSite P00966; -.
Enzyme and pathway databases
BioCyc MetaCyc:MON-11304; -.
Reactome REACT_13; Metabolism of amino acids.
Organism-specific databases
H-InvDB HIX0008469; -.
HIX0025782; -.
HIX0035239; -.
HGNC HGNC:758; ASS1.
GenAtlas ASS1.
HPA CAB001953; -.
MIM 215700; phenotype. [NCBI / EBI]
603470; gene. [NCBI / EBI]
Orphanet 187; Citrullinemia.
PharmGKB PA30299; -.
GeneCards P00966.
Gene expression databases
ArrayExpress P00966; -.
CleanEx HS_ASS1; -.
GermOnline ENSG00000130707; Homo sapiens.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (traceable author statement from ProtInc).
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
GO:0000050; Biological process: urea cycle (traceable author statement from ProtInc).
QuickGo view.
Family and domain databases
InterPro IPR001518; Arginosuc_synth.
IPR014729; Rossmann-like_a/b/a_fold.
Graphical view of domain structure.
Gene3D G3DSA:3.40.50.620; Rossmann-like_a/b/a_fold; 1.
PANTHER PTHR11587; Arginosuc_synth; 1.
Pfam PF00764; Arginosuc_synth; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR00032; argG; 1.
PROSITE PS00564; ARGININOSUCCIN_SYN_1; 1.
PS00565; ARGININOSUCCIN_SYN_2; 1.
BLOCKS P00966.
ProtoNet P00966.
Genome annotation databases
Ensembl ENSG00000130707; Homo sapiens. [Contig view]
GeneID 445; -.
KEGG hsa:445; -.
Phylogenomic databases
HOGENOM P00966; -.
HOVERGEN P00966; -.
Other
DrugBank DB00171; Adenosine triphosphate.
DB00125; L-Arginine.
DB00128; L-Aspartic Acid.
DB00155; L-Citrulline.
LinkHub P00966; -.
NextBio 1871; -.
SOURCE ASS1; Homo sapiens.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Amino-acid biosynthesis; Arginine biosynthesis; ATP-binding; Direct protein sequencing; Disease mutation; Ligase; Nucleotide-binding; Phosphoprotein; Urea cycle.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   412  412     Argininosuccinate synthase. PRO_0000148554
NP_BIND   10    18  9     ATP (By similarity). 
NP_BIND   115   123  9     ATP (By similarity). 
BINDING   36    36        ATP; via amide nitrogen and carbonyl oxygen (By similarity). 
BINDING   87    87        Citrulline (By similarity). 
BINDING   92    92        Citrulline (By similarity). 
BINDING   119   119        Aspartate (By similarity). 
BINDING   123   123        Aspartate (By similarity). 
BINDING   123   123        Citrulline (By similarity). 
BINDING   124   124        Aspartate (By similarity). 
BINDING   127   127        Citrulline (By similarity). 
BINDING   180   180        Citrulline (By similarity). 
BINDING   189   189        Citrulline (By similarity). 
BINDING   270   270        Citrulline (By similarity). 
BINDING   282   282        Citrulline (By similarity). 
MOD_RES   352   352        Phosphoserine. 
VARIANT   14    14  1     G -> S (in CTLN1). VAR_000681 
VARIANT   18    18  1     S -> L (in CTLN1). VAR_000682 
VARIANT   19    19  1     C -> R (in CTLN1). VAR_015891 
VARIANT   69    69  1     V -> A (in CTLN1). VAR_016013 
VARIANT   86    86  1     R -> C (in CTLN1). VAR_000683 
VARIANT   86    86  1     R -> H (in CTLN1). VAR_015892 
VARIANT   95    95  1     R -> S (in CTLN1). VAR_015893 
VARIANT   96    96  1     P -> S (in CTLN1). VAR_015894 
VARIANT   108   108  1     R -> L (in CTLN1; dbSNP:rs35269064 [NCBI]). VAR_016014 
VARIANT   117   117  1     G -> D (in CTLN1). VAR_015896 
VARIANT   117   117  1     G -> S (in CTLN1). VAR_015895 
VARIANT   118   118  1     A -> T (in CTLN1). VAR_000684 
VARIANT   119   119  1     T -> I (in CTLN1). VAR_016015 
VARIANT   157   157  1     R -> C (in CTLN1). VAR_015897 
VARIANT   157   157  1     R -> H (in CTLN1). VAR_000685 
VARIANT   179   179  1     W -> R (in CTLN1; mild). VAR_015898 
VARIANT   180   180  1     S -> N (in CTLN1). VAR_000686 
VARIANT   191   191  1     E -> K (in CTLN1). VAR_015899 
VARIANT   192   192  1     A -> V (in CTLN1). VAR_000687 
VARIANT   265   265  1     R -> H (in CTLN1). VAR_015900 
VARIANT   269   269  1     V -> M (in CTLN1). VAR_015901 
VARIANT   270   270  1     E -> Q (in CTLN1). VAR_016007 
VARIANT   272   272  1     R -> C (in CTLN1). VAR_000688 
VARIANT   279   279  1     R -> Q (in CTLN1). VAR_016008 
VARIANT   280   280  1     G -> R (in CTLN1). VAR_000689 
VARIANT   283   283  1     E -> K (in CTLN1). VAR_015902 
VARIANT   304   304  1     R -> W (in CTLN1). VAR_000690 
VARIANT   310   310  1     K -> Q (in CTLN1). VAR_016009 
VARIANT   310   310  1     K -> R (in CTLN1). VAR_015903 
VARIANT   324   324  1     G -> S (in CTLN1). VAR_000691 
VARIANT   362   362  1     G -> V (in CTLN1; mild). VAR_015904 
VARIANT   363   363  1     R -> G (in CTLN1). VAR_016010 
VARIANT   363   363  1     R -> L (in CTLN1). VAR_000692 
VARIANT   363   363  1     R -> Q (in CTLN1). VAR_016011 
VARIANT   363   363  1     R -> W (in CTLN1). VAR_000693 
VARIANT   389   389  1     T -> I (in CTLN1). VAR_016012 
VARIANT   390   390  1     G -> R (in CTLN1). VAR_000694 
CONFLICT   325   327        FWH -> LRP (in Ref. 1 and 2). 
Sequence information
Length: 412 AA [This is the length of the unprocessed precursor] Molecular weight: 46530 Da [This is the MW of the unprocessed precursor] CRC64: 47CAD2373AE47E47 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MSSKGSVVLA YSGGLDTSCI LVWLKEQGYD VIAYLANIGQ KEDFEEARKK ALKLGAKKVF 

        70         80         90        100        110        120 
IEDVSREFVE EFIWPAIQSS ALYEDRYLLG TSLARPCIAR KQVEIAQREG AKYVSHGATG 

       130        140        150        160        170        180 
KGNDQVRFEL SCYSLAPQIK VIAPWRMPEF YNRFKGRNDL MEYAKQHGIP IPVTPKNPWS 

       190        200        210        220        230        240 
MDENLMHISY EAGILENPKN QAPPGLYTKT QDPAKAPNTP DILEIEFKKG VPVKVTNVKD 

       250        260        270        280        290        300 
GTTHQTSLEL FMYLNEVAGK HGVGRIDIVE NRFIGMKSRG IYETPAGTIL YHAHLDIEAF 

       310        320        330        340        350        360 
TMDREVRKIK QGLGLKFAEL VYTGFWHSPE CEFVRHCIAK SQERVEGKVQ VSVLKGQVYI 

       370        380        390        400        410 
LGRESPLSLY NEELVSMNVQ GDYEPTDATG FININSLRLK EYHRLQSKVT AK 

P00966 in FASTA format

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