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UniProtKB/Swiss-Prot entry P00935


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name METB_ECOLI
Primary accession number P00935
Secondary accession number Q2M8N5
Integrated into Swiss-Prot on July 21, 1986
Sequence was last modified on July 21, 1986 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 95)
Name and origin of the protein
Protein name Cystathionine gamma-synthase
Synonyms CGS
EC 2.5.1.48
O-succinylhomoserine (thiol)-lyase
Gene name
Name: metB
OrderedLocusNames: b3939, JW3910
From
Escherichia coli (strain K12) [TaxID: 83333] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=K12;
PubMed=6361020 [NCBI, ExPASy, EBI, Israel, Japan]
Duchange N., Zakin M.M., Ferrara P., Saint-Girons I., Park I., Tran S.V., Py M.-C., Cohen G.N.;
"Structure of the metJBLF cluster in Escherichia coli K12. Sequence of the metB structural gene and of the 5'- and 3'-flanking regions of the metBL operon.";
J. Biol. Chem. 258:14868-14871(1983).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / MG1655 / ATCC 47076;
DOI=10.1093/nar/21.15.3391; PubMed=8346018 [NCBI, ExPASy, EBI, Israel, Japan]
Plunkett G. III, Burland V., Daniels D.L., Blattner F.R.;
"Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.";
Nucleic Acids Res. 21:3391-3398(1993).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / MG1655 / ATCC 47076;
DOI=10.1126/science.277.5331.1453; PubMed=9278503 [NCBI, ExPASy, EBI, Israel, Japan]
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.;
"The complete genome sequence of Escherichia coli K-12.";
Science 277:1453-1474(1997).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
DOI=10.1038/msb4100049; PubMed=16738553 [NCBI, ExPASy, EBI, Israel, Japan]
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.";
Mol. Syst. Biol. 2:E1-E5(2006).
[5]
PROTEIN SEQUENCE OF 182-209.
DOI=10.1016/0006-291X(87)90968-5; PubMed=3307782 [NCBI, ExPASy, EBI, Israel, Japan]
Martel A., Bouthier de la Tour C., Le Goffic F.;
"Pyridoxal 5'phosphate binding site of Escherichia coli beta cystathionase and cystathionine gamma synthase comparison of their sequences.";
Biochem. Biophys. Res. Commun. 147:565-571(1987).
[6]
X-RAY CRYSTALLOGRAPHY (1.5 ANGSTROMS).
DOI=10.1093/emboj/17.23.6827; PubMed=9843488 [NCBI, ExPASy, EBI, Israel, Japan]
Clausen T., Huber R., Prade L., Wahl M.C., Messerschmidt A.;
"Crystal structure of Escherichia coli cystathionine gamma-synthase at 1.5-A resolution.";
EMBO J. 17:6827-6838(1998).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
K01546; AAA24167.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
L19201; AAB03071.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
U00096; AAC76921.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP009048; BAE77371.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A01158; SYECCG.
RefSeq AP_003870.1; -.
NP_418374.1; -.
3D structure databases
PDB
1CS1; X-ray; 1.50 A; A/B/C/D=1-386.[ExPASy / RCSB / EBI]
PDBsum 1CS1; -.
ModBase P00935.
Protein-protein interaction databases
DIP DIP:10192N; -.
IntAct P00935; -.
Enzyme and pathway databases
BioCyc EcoCyc:O-SUCCHOMOSERLYASE-MON; -.
MetaCyc:O-SUCCHOMOSERLYASE-MON; -.
2D gel databases
ECO2DBASE G040.1; 6TH EDITION.
Organism-specific databases
EchoBASE EB0577; -.
EcoGene EG10582; metB.
Ontologies
GO
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
QuickGo view.
Family and domain databases
InterPro IPR000277; Cys/Met-Metab_PyrdxlP-dep_enz.
IPR011821; O_succ_thio_ly.
IPR015421; PyrdxlP-dep_Trfase_major_sub1.
IPR015422; PyrdxlP-dep_Trfase_major_sub2.
Graphical view of domain structure.
Gene3D G3DSA:3.40.640.10; PyrdxlP-dep_Trfase_major_sub1; 1.
G3DSA:3.90.1150.10; PyrdxlP-dep_Trfase_major_sub2; 1.
PANTHER PTHR11808; Cys_Met_Meta_PP; 1.
Pfam PF01053; Cys_Met_Meta_PP; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF001434; CGS; 1.
TIGRFAMs TIGR02080; O_succ_thio_ly; 1.
PROSITE PS00868; CYS_MET_METAB_PP; 1.
BLOCKS P00935.
Genome annotation databases
GeneID 948434; -.
GenomeReviews U00096_GR; b3939.
AP009048_GR; JW3910.
KEGG ecj:JW3910; -.
eco:b3939; -.
Phylogenomic databases
HOGENOM P00935; -.
Genome annotation databases
CMR P00935; b3939.
Other
ProtoNet P00935.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Amino-acid biosynthesis; Complete proteome; Cytoplasm; Direct protein sequencing; Methionine biosynthesis; Pyridoxal phosphate; Transferase.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   386  386     Cystathionine gamma-synthase. PRO_0000114756
BINDING   198   198        Pyridoxal phosphate (covalent). 
HELIX   5    11  7      
TURN   12    15  4      
TURN   18    20  3      
STRAND   22    24  3      
STRAND   31    33  3      
TURN   47    49  3      
HELIX   52    65  14      
STRAND   68    75  8      
HELIX   76    87  12      
STRAND   93    97  5      
HELIX   102   112  11      
TURN   113   115  3      
STRAND   118   122  5      
HELIX   127   135  9      
STRAND   139   144  6      
TURN   148   150  3      
HELIX   156   165  10      
STRAND   169   173  5      
TURN   175   177  3      
TURN   179   181  3      
HELIX   184   187  4      
STRAND   190   195  6      
TURN   196   201  6      
STRAND   209   215  7      
HELIX   216   228  13      
HELIX   235   245  11      
HELIX   248   266  19      
STRAND   272   276  5      
HELIX   286   292  7      
STRAND   298   306  9      
HELIX   308   316  9      
STRAND   319   325  7      
STRAND   329   331  3      
STRAND   333   336  4      
HELIX   337   339  3      
TURN   340   344  5      
HELIX   347   352  6      
STRAND   359   363  5      
HELIX   369   383  15      
Sequence information
Length: 386 AA [This is the length of the unprocessed precursor] Molecular weight: 41550 Da [This is the MW of the unprocessed precursor] CRC64: 423B825219A42E9E [This is a checksum on the sequence]
        10         20         30         40         50         60 
MTRKQATIAV RSGLNDDEQY GCVVPPIHLS STYNFTGFNE PRAHDYSRRG NPTRDVVQRA 

        70         80         90        100        110        120 
LAELEGGAGA VLTNTGMSAI HLVTTVFLKP GDLLVAPHDC YGGSYRLFDS LAKRGCYRVL 

       130        140        150        160        170        180 
FVDQGDEQAL RAALAEKPKL VLVESPSNPL LRVVDIAKIC HLAREVGAVS VVDNTFLSPA 

       190        200        210        220        230        240 
LQNPLALGAD LVLHSCTKYL NGHSDVVAGV VIAKDPDVVT ELAWWANNIG VTGGAFDSYL 

       250        260        270        280        290        300 
LLRGLRTLVP RMELAQRNAQ AIVKYLQTQP LVKKLYHPSL PENQGHEIAA RQQKGFGAML 

       310        320        330        340        350        360 
SFELDGDEQT LRRFLGGLSL FTLAESLGGV ESLISHAATM THAGMAPEAR AAAGISETLL 

       370        380 
RISTGIEDGE DLIADLENGF RAANKG 

P00935 in FASTA format

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