ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry P00877


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name RBL_CHLRE
Primary accession number P00877
Secondary accession numbers None
Integrated into Swiss-Prot on July 21, 1986
Sequence was last modified on July 21, 1986 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 85)
Name and origin of the protein
Protein name Ribulose bisphosphate carboxylase large chain [Precursor]
Synonyms RuBisCO large subunit
EC 4.1.1.39
Gene name
Name: rbcL
From
Chlamydomonas reinhardtii [TaxID: 3055] 
Encoded on Plastid; Chloroplast.
Taxonomy Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
DOI=10.1016/0022-2836(82)90547-2; PubMed=6302265 [NCBI, ExPASy, EBI, Israel, Japan]
Dron M., Rahire M., Rochaix J.-D.;
"Sequence of the chloroplast DNA region of Chlamydomonas reinhardii containing the gene of the large subunit of ribulose bisphosphate carboxylase and parts of its flanking genes.";
J. Mol. Biol. 162:775-793(1982).
[2]
PROTEIN SEQUENCE OF 3-14, AND ACETYLATION AT PRO-3.
PubMed=16668742 [NCBI, ExPASy, EBI, Israel, Japan]
Houtz R.L., Poneleit L., Jones S.B., Royer M., Stults J.T.;
"Posttranslational modifications in the amino-terminal region of the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from several plant species.";
Plant Physiol. 98:1170-1174(1992).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1105/tpc.006155; PubMed=12417694 [NCBI, ExPASy, EBI, Israel, Japan]
Maul J.E., Lilly J.W., Cui L., dePamphilis C.W., Miller W., Harris E.H., Stern D.B.;
"The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats.";
Plant Cell 14:2659-2679(2002).
[4]
X-RAY CRYSTALLOGRAPHY (1.4 ANGSTROMS) IN COMPLEX WITH THE TRANSITION-STATE ANALOG 2-CABP.
STRAIN=2137;
DOI=10.1074/jbc.M107765200; PubMed=11641402 [NCBI, ExPASy, EBI, Israel, Japan]
Taylor T.C., Backlund A., Bjorhall K., Spreitzer R.J., Andersson I.;
"First crystal structure of Rubisco from a green alga, Chlamydomonas reinhardtii.";
J. Biol. Chem. 276:48159-48164(2001).
[5]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND X-RAY CRYSTALLOGRAPHY (1.8 ANGSTROMS) IN COMPLEX WITH THE TRANSITION-STATE ANALOG 2-CABP.
STRAIN=137c / CC-125;
DOI=10.1006/jmbi.2001.5381; PubMed=11866526 [NCBI, ExPASy, EBI, Israel, Japan]
Mizohata E., Matsumura H., Okano Y., Kumei M., Takuma H., Onodera J., Kato K., Shibata N., Inoue T., Yokota A., Kai Y.;
"Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.";
J. Mol. Biol. 316:679-691(2002).
Comments
  • FUNCTION: RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
  • CATALYTIC ACTIVITY: 2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.
  • CATALYTIC ACTIVITY: 3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.
  • COFACTOR: Binds 1 magnesium ion per subunit.
  • SUBUNIT: Heterohexadecamer of 8 large chains and 8 small chains; disulfide-linked. The disulfide link is formed within the large subunit homodimers.
  • SUBCELLULAR LOCATION: Plastid, chloroplast.
  • PTM: The disulfide bond which can form between Cys-247 in the large chain dimeric partners within the hexadecamer appears to be associated with oxidative stress and protein turnover (By similarity). The disulfide bond reported in 1IR2 may be the result of oxidation during crystallization.
  • PTM: The electron density found in the position of Thr-471 (PubMed:11866526 only) suggests it is either O-methylthreonine, or Ile, which may be produced by RNA editing.
  • MISCELLANEOUS: The basic functional RuBisCO is composed of a large chain homodimer in a "head-to-tail" conformation. In form I RuBisCO this homodimer is arranged in a barrel-like tetramer with the small subunits forming a tetrameric "cap" on each end of the "barrel".
  • SIMILARITY: Belongs to the RuBisCO large chain family. Type I subfamily.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
J01399; AAA84449.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BK000554; DAA00950.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A01097; RKKML.
RefSeq NP_958405.1; -.
3D structure databases
PDB
1GK8; X-ray; 1.40 A; A/C/E/G=1-475.[ExPASy / RCSB / EBI]
1IR2; X-ray; 1.84 A; A/B/C/D/E/F/G/H/S/T/U/V/W/X/Y/Z=1-475.[ExPASy / RCSB / EBI]
1UW9; X-ray; 2.05 A; A/B/E/H/K/O/R/V=1-475.[ExPASy / RCSB / EBI]
1UWA; X-ray; 2.30 A; A/B/E/H/K/O/R/V=1-475.[ExPASy / RCSB / EBI]
1UZD; X-ray; 2.40 A; A/B/E/H/K/O/R/V=1-475.[ExPASy / RCSB / EBI]
1UZH; X-ray; 2.20 A; A/B/E/H/K/O/R/V=1-475.[ExPASy / RCSB / EBI]
2V63; X-ray; 1.80 A; A/B/C/D/E/F/G/H=1-475.[ExPASy / RCSB / EBI]
2V67; X-ray; 2.00 A; A/B/C/D/E/F/G/H=1-475.[ExPASy / RCSB / EBI]
2V68; X-ray; 2.30 A; A/B/C/D/E/F/G/H=1-475.[ExPASy / RCSB / EBI]
2V69; X-ray; 2.80 A; A/B/C/D/E/F/G/H=1-475.[ExPASy / RCSB / EBI]
2V6A; X-ray; 1.50 A; A/B/C/D/E/F/G/H=1-475.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1GK8; -.
1IR2; -.
1UW9; -.
1UWA; -.
1UZD; -.
1UZH; -.
2V63; -.
2V67; -.
2V68; -.
2V69; -.
2V6A; -.
ModBase P00877.
Ontologies
GO
GO:0016984; Molecular function: ribulose-bisphosphate carboxylase activity (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_01338; -; 1.
PBIL [Tree]
InterPro IPR000685; RuBisCO_lsu_C.
IPR017443; RuBisCO_lsu_fd_N.
IPR017444; RuBisCO_lsu_N.
Graphical view of domain structure.
Gene3D G3DSA:3.20.20.110; RuBisCO_large; 1.
G3DSA:3.30.70.150; RuBisCO_large; 1.
Pfam PF00016; RuBisCO_large; 1.
PF02788; RuBisCO_large_N; 1.
Pfam graphical view of domain structure.
PROSITE PS00157; RUBISCO_LARGE; 1.
BLOCKS P00877.
Genome annotation databases
GeneID 2717040; -.
KEGG cre:ChreCp049; -.
Other
ProtoNet P00877.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Acetylation; Calvin cycle; Carbon dioxide fixation; Chloroplast; Direct protein sequencing; Hydroxylation; Lyase; Magnesium; Metal-binding; Methylation; Monooxygenase; Oxidoreductase; Photorespiration; Photosynthesis; Plastid.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
PROPEP   1     2  2      PRO_0000031175
CHAIN   3   475  473     Ribulose bisphosphate carboxylase large chain. PRO_0000031176
ACT_SITE   175   175        Proton acceptor. 
ACT_SITE   294   294        Proton acceptor. 
METAL   201   201        Magnesium; via carbamate group. 
METAL   203   203        Magnesium. 
METAL   204   204        Magnesium. 
BINDING   123   123        Substrate; in homodimeric partner. 
BINDING   173   173        Substrate. 
BINDING   177   177        Substrate. 
BINDING   295   295        Substrate. 
BINDING   327   327        Substrate. 
BINDING   379   379        Substrate. 
SITE   334   334  1     Transition state stabilizer. 
MOD_RES   3     3        N-acetylproline. 
MOD_RES   104   104        4-hydroxyproline. 
MOD_RES   151   151        4-hydroxyproline. 
MOD_RES   201   201        N6-carboxylysine. 
MOD_RES   256   256        S-methylcysteine. 
MOD_RES   369   369        S-methylcysteine. 
DISULFID   247   247        Interchain; in linked form. 
VARIANT   46    46  1     L -> P (in strain: 137c). 
HELIX   21    24  4      
STRAND   36    44  9      
HELIX   50    60  11      
TURN   61    63  3      
HELIX   70    74  5      
HELIX   77    80  4      
STRAND   83    89  7      
STRAND   97   103  7      
HELIX   105   107  3      
HELIX   113   121  9      
HELIX   124   126  3      
STRAND   130   139  10      
HELIX   142   145  4      
HELIX   155   162  8      
STRAND   169   171  3      
STRAND   175   178  4      
HELIX   182   194  13      
STRAND   198   201  4      
STRAND   207   209  3      
HELIX   214   232  19      
STRAND   237   241  5      
HELIX   247   260  14      
STRAND   263   268  6      
HELIX   269   272  4      
HELIX   274   287  14      
STRAND   290   294  5      
HELIX   298   302  5      
STRAND   305   309  5      
HELIX   311   321  11      
STRAND   324   327  4      
STRAND   331   335  5      
HELIX   339   350  12      
STRAND   352   354  3      
HELIX   358   360  3      
STRAND   375   381  7      
HELIX   384   386  3      
HELIX   387   394  8      
STRAND   396   401  6      
HELIX   404   407  4      
HELIX   413   432  20      
HELIX   437   451  15      
HELIX   453   462  10      
Sequence information
Length: 475 AA [This is the length of the unprocessed precursor] Molecular weight: 52543 Da [This is the MW of the unprocessed precursor] CRC64: 5A9BFD394CF7D4D4 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MVPQTETKAG AGFKAGVKDY RLTYYTPDYV VRDTDILAAF RMTPQLGVPP EECGAAVAAE 

        70         80         90        100        110        120 
SSTGTWTTVW TDGLTSLDRY KGRCYDIEPV PGEDNQYIAY VAYPIDLFEE GSVTNMFTSI 

       130        140        150        160        170        180 
VGNVFGFKAL RALRLEDLRI PPAYVKTFVG PPHGIQVERD KLNKYGRGLL GCTIKPKLGL 

       190        200        210        220        230        240 
SAKNYGRAVY ECLRGGLDFT KDDENVNSQP FMRWRDRFLF VAEAIYKAQA ETGEVKGHYL 

       250        260        270        280        290        300 
NATAGTCEEM MKRAVCAKEL GVPIIMHDYL TGGFTANTSL AIYCRDNGLL LHIHRAMHAV 

       310        320        330        340        350        360 
IDRQRNHGIH FRVLAKALRM SGGDHLHSGT VVGKLEGERE VTLGFVDLMR DDYVEKDRSR 

       370        380        390        400        410        420 
GIYFTQDWCS MPGVMPVASG GIHVWHMPAL VEIFGDDACL QFGGGTLGHP WGNAPGAAAN 

       430        440        450        460        470 
RVALEACTQA RNEGRDLARE GGDVIRSACK WSPELAAACE VWKEIKFEFD TIDKL 

P00877 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
 Hosted by ch flag SIB Switzerland Mirror sites: Australia  Brazil  Canada  China  Korea
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!