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UniProtKB/Swiss-Prot entry P00746


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name CFAD_HUMAN
Primary accession number P00746
Secondary accession numbers Q5U5S1 Q86VJ5 Q8N4E0 Q8WZB4
Integrated into Swiss-Prot on July 21, 1986
Sequence was last modified on September 11, 2007 (Sequence version 5)
Annotations were last modified on    November 4, 2008 (Entry version 103)
Name and origin of the protein
Protein name Complement factor D [Precursor]
Synonyms EC 3.4.21.46
C3 convertase activator
Properdin factor D
Adipsin
Gene name
Name: CFD
Synonyms: DF, PFD
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
Relle M.;
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Placenta, Skin, Spleen, and Testis;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[3]
NUCLEOTIDE SEQUENCE [MRNA] OF 8-253.
PubMed=1374388 [NCBI, ExPASy, EBI, Israel, Japan]
White R.T., Damm D., Hancock N., Rosen B.S., Lowell B.B., Usher P., Flier J.S., Spiegelman B.M.;
"Human adipsin is identical to complement factor D and is expressed at high levels in adipose tissue.";
J. Biol. Chem. 267:9210-9213(1992).
[4]
PROTEIN SEQUENCE OF 26-252.
DOI=10.1021/bi00306a025; PubMed=6383466 [NCBI, ExPASy, EBI, Israel, Japan]
Niemann M.A., Bhown A.S., Bennett J.C., Volanakis J.E.;
"Amino acid sequence of human D of the alternative complement pathway.";
Biochemistry 23:2482-2486(1984).
[5]
PARTIAL PROTEIN SEQUENCE OF 26-252.
DOI=10.1016/0014-5793(84)80110-6; PubMed=6363133 [NCBI, ExPASy, EBI, Israel, Japan]
Johnson D.M.A., Gagnon J., Reid K.B.M.;
"Amino acid sequence of human factor D of the complement system. Similarity in sequence between factor D and proteases of non-plasma origin.";
FEBS Lett. 166:347-351(1984).
[6]
PARTIAL PROTEIN SEQUENCE OF 26-82.
PubMed=6987665 [NCBI, ExPASy, EBI, Israel, Japan]
Volanakis J.E., Bhown A.S., Bennett J.C., Mole J.E.;
"Partial amino acid sequence of human factor D: homology with serine proteases.";
Proc. Natl. Acad. Sci. U.S.A. 77:1116-1119(1980).
[7]
PARTIAL PROTEIN SEQUENCE OF 26-78.
PubMed=6776531 [NCBI, ExPASy, EBI, Israel, Japan]
Davis A.E. III;
"Active site amino acid sequence of human factor D.";
Proc. Natl. Acad. Sci. U.S.A. 77:4938-4942(1980).
[8]
PARTIAL PROTEIN SEQUENCE OF 26-61 AND 194-220.
PubMed=6821372 [NCBI, ExPASy, EBI, Israel, Japan]
Johnson D.M.A., Gagnon J., Reid K.B.M.;
"Factor D of the alternative pathway of human complement. Purification, alignment and N-terminal amino acid sequences of the major cyanogen bromide fragments, and localization of the serine residue at the active site.";
Biochem. J. 187:863-874(1980).
[9]
X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS).
DOI=10.1006/jmbi.1994.1021; PubMed=8289289 [NCBI, ExPASy, EBI, Israel, Japan]
Narayana S.V.L., Carson M., El-Kabbani O., Kilpatrick J.M., Moore D., Chen X., Bugg C.E., Volanakis J.E., Delucas L.J.;
"Structure of human factor D. A complement system protein at 2.0-A resolution.";
J. Mol. Biol. 235:695-708(1994).
[10]
X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS).
DOI=10.1074/jbc.270.41.24399; PubMed=7592653 [NCBI, ExPASy, EBI, Israel, Japan]
Kim S., Narayana S.V., Volanakis J.E.;
"Crystal structure of a complement factor D mutant expressing enhanced catalytic activity.";
J. Biol. Chem. 270:24399-24405(1995).
[11]
VARIANTS COMPLEMENT FACTOR D DEFICIENCY GLY-213 AND ARG-214.
DOI=10.1182/blood-2005-07-2820; PubMed=16527897 [NCBI, ExPASy, EBI, Israel, Japan]
Sprong T., Roos D., Weemaes C., Neeleman C., Geesing C.L., Mollnes T.E., van Deuren M.;
"Deficient alternative complement pathway activation due to factor D deficiency by 2 novel mutations in the complement factor D gene in a family with meningococcal infections.";
Blood 107:4865-4870(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AJ313463; CAC48304.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC034529; AAH34529.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC040146; AAH40146.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC051001; AAH51001.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC057807; AAH57807.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M84526; AAA35527.1; ALT_INIT; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A40197; DBHU.
RefSeq NP_001919.2; -.
UniGene Hs.155597
3D structure databases
PDB
1BIO; X-ray; 1.50 A; A=26-253.[ExPASy / RCSB / EBI]
1DFP; X-ray; 2.40 A; A/B=26-253.[ExPASy / RCSB / EBI]
1DIC; X-ray; 1.80 A; A=26-253.[ExPASy / RCSB / EBI]
1DST; X-ray; 2.00 A; A=26-253.[ExPASy / RCSB / EBI]
1DSU; X-ray; 2.00 A; A/B=26-253.[ExPASy / RCSB / EBI]
1FDP; X-ray; 2.10 A; A/B/C/D=19-253.[ExPASy / RCSB / EBI]
1HFD; X-ray; 2.30 A; A=26-253.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1BIO; -.
1DFP; -.
1DIC; -.
1DST; -.
1DSU; -.
1FDP; -.
1HFD; -.
ModBase P00746.
Protein family/group databases
MEROPS S01.191; -.
Enzyme and pathway databases
Reactome REACT_604; Hemostasis.
REACT_6900; Signaling in Immune System.
Organism-specific databases
HGNC HGNC:2771; CFD.
GenAtlas CFD.
HPA CAB016383; -.
MIM 134350; gene+phenotype. [NCBI / EBI]
GeneCards P00746.
Gene expression databases
ArrayExpress P00746; -.
CleanEx HS_CFD; -.
GermOnline ENSG00000197766; Homo sapiens.
Ontologies
GO
GO:0005576; Cellular component: extracellular region (inferred from experiment from Reactome).
GO:0031093; Cellular component: platelet alpha granule lumen (inferred from experiment from Reactome).
GO:0004252; Molecular function: serine-type endopeptidase activity (traceable author statement from ProtInc).
GO:0006957; Biological process: complement activation, alternative pathway (inferred from experiment from Reactome).
QuickGo view.
Family and domain databases
InterPro IPR001254; Peptidase_S1_S6.
IPR001314; Peptidase_S1A.
Graphical view of domain structure.
Pfam PF00089; Trypsin; 1.
Pfam graphical view of domain structure.
PRINTS PR00722; CHYMOTRYPSIN.
SMART SM00020; Tryp_SPc; 1.
SMART graphical view of domain structure.
PROSITE PS50240; TRYPSIN_DOM; 1.
PS00134; TRYPSIN_HIS; 1.
PS00135; TRYPSIN_SER; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS P00746.
ProtoNet P00746.
Genome annotation databases
Ensembl ENSG00000197766; Homo sapiens. [Contig view]
GeneID 1675; -.
KEGG hsa:1675; -.
Phylogenomic databases
HOGENOM P00746; -.
HOVERGEN P00746; -.
Other
LinkHub P00746; -.
NextBio 6892; -.
SOURCE CFD; Homo sapiens.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Complement alternate pathway; Direct protein sequencing; Disease mutation; Hydrolase; Immune response; Innate immunity; Polymorphism; Protease; Secreted; Serine protease; Signal; Zymogen.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    20  20     Potential. 
PROPEP   21    25  5     Activation peptide (Potential). PRO_0000027560
CHAIN   26   253  228     Complement factor D. PRO_0000027561
DOMAIN   26   253  228     Peptidase S1. 
ACT_SITE   66    66        Charge relay system. 
ACT_SITE   114   114        Charge relay system. 
ACT_SITE   208   208        Charge relay system. 
DISULFID   51    67         
DISULFID   148   214         
DISULFID   179   195         
DISULFID   204   229         
VARIANT   213   213  1     V -> G (in complement factor D deficiency). VAR_034866 [3D]
VARIANT   214   214  1     C -> R (in complement factor D deficiency). VAR_034867 [3D]
VARIANT   248   248  1     I -> M (in dbSNP:rs2230216 [NCBI]). VAR_034868 [3D]
CONFLICT   21    21        P -> R (in Ref. 3; AAA35527). 
CONFLICT   26    26        I -> M (in Ref. 3; AAA35527). 
CONFLICT   35    35        H -> F (in Ref. 6; AA sequence). 
CONFLICT   40    40        M -> V (in Ref. 6; AA sequence). 
CONFLICT   49    49        H -> E (in Ref. 5 and 8). 
CONFLICT   52    52        G -> A (in Ref. 3; AAA35527). 
CONFLICT   59    59        Q -> R (in Ref. 3; AAA35527). 
CONFLICT   63    63        S -> T (in Ref. 5; AA sequence). 
CONFLICT   73    73        D -> G (in Ref. 5; AA sequence). 
CONFLICT   83    86        HSLS -> THLP (in Ref. 4; AA sequence). 
CONFLICT   83    84        HS -> ST (in Ref. 5; AA sequence). 
CONFLICT   94    95        Missing (in Ref. 5; AA sequence). 
CONFLICT   96    96        D -> E (in Ref. 5; AA sequence). 
CONFLICT   136   136        Q -> G (in Ref. 5; AA sequence). 
CONFLICT   178   191        TCNRRTHHDGAITE -> KCRLYDVL (in Ref. 5; AA sequence). 
CONFLICT   243   243        S -> T (in Ref. 4; AA sequence). 
CONFLICT   250   250        S -> H (in Ref. 4; AA sequence). 
CONFLICT   250   250        Missing (in Ref. 5; AA sequence). 
STRAND   40    45  6      
STRAND   48    57  10      
STRAND   60    63  4      
HELIX   65    70  6      
STRAND   72    74  3      
STRAND   76    81  6      
STRAND   83    87  5      
STRAND   93   102  10      
STRAND   116   122  7      
STRAND   147   154  8      
STRAND   167   174  8      
HELIX   176   180  5      
TURN   182   187  6      
STRAND   193   196  4      
TURN   205   209  5      
STRAND   211   214  4      
STRAND   217   222  6      
STRAND   236   240  5      
HELIX   241   244  4      
HELIX   245   252  8      
Sequence information
Length: 253 AA [This is the length of the unprocessed precursor] Molecular weight: 27033 Da [This is the MW of the unprocessed precursor] CRC64: 78B06C209DEEA362 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MHSWERLAVL VLLGAAACAA PPRGRILGGR EAEAHARPYM ASVQLNGAHL CGGVLVAEQW 

        70         80         90        100        110        120 
VLSAAHCLED AADGKVQVLL GAHSLSQPEP SKRLYDVLRA VPHPDSQPDT IDHDLLLLQL 

       130        140        150        160        170        180 
SEKATLGPAV RPLPWQRVDR DVAPGTLCDV AGWGIVNHAG RRPDSLQHVL LPVLDRATCN 

       190        200        210        220        230        240 
RRTHHDGAIT ERLMCAESNR RDSCKGDSGG PLVCGGVLEG VVTSGSRVCG NRKKPGIYTR 

       250 
VASYAAWIDS VLA 

P00746 in FASTA format

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