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UniProtKB/Swiss-Prot entry O95409


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name ZIC2_HUMAN
Primary accession number O95409
Secondary accession numbers Q5VYA9 Q9H309
Integrated into Swiss-Prot on May 30, 2000
Sequence was last modified on April 16, 2002 (Sequence version 2)
Annotations were last modified on    June 16, 2009 (Entry version 85)
Name and origin of the protein
Protein name Zinc finger protein ZIC 2
Synonym Zinc finger protein of the cerebellum 2
Gene name
Name: ZIC2
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND VARIANT HPE5 POLY-ALA INSERTION.
DOI=10.1038/2484; PubMed=9771712 [NCBI, ExPASy, EBI, Israel, Japan]
Brown S.A., Warburton D., Brown L.Y., Yu C.Y., Roeder E.R., Stengel-Rutkowski S., Hennekam R.C.M., Muenke M.;
"Holoprosencephaly due to mutations in ZIC2, a homologue of Drosophila odd-paired.";
Nat. Genet. 20:180-183(1998).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Brain;
DOI=10.1074/jbc.M007906200; PubMed=10984499 [NCBI, ExPASy, EBI, Israel, Japan]
Yang Y., Hwang C.K., Junn E., Lee G., Mouradian M.M.;
"ZIC2 and Sp3 repress Sp1-induced activation of the human D1A dopamine receptor gene.";
J. Biol. Chem. 275:38863-38869(2000).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nature02379; PubMed=15057823 [NCBI, ExPASy, EBI, Israel, Japan]
Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T., Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Bannerjee R., Barlow K.F., Bates K., Beasley H., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burrill W., Carder C., Carter N.P., Chapman J.C., Clamp M.E., Clark S.Y., Clarke G., Clee C.M., Clegg S.C., Cobley V., Collins J.E., Corby N., Coville G.J., Deloukas P., Dhami P., Dunham I., Dunn M., Earthrowl M.E., Ellington A.G., Faulkner L., Frankish A.G., Frankland J., French L., Garner P., Garnett J., Gilbert J.G.R., Gilson C.J., Ghori J., Grafham D.V., Gribble S.M., Griffiths C., Hall R.E., Hammond S., Harley J.L., Hart E.A., Heath P.D., Howden P.J., Huckle E.J., Hunt P.J., Hunt A.R., Johnson C., Johnson D., Kay M., Kimberley A.M., King A., Laird G.K., Langford C.J., Lawlor S., Leongamornlert D.A., Lloyd D.M., Lloyd C., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., McLaren S.J., McMurray A., Milne S., Moore M.J.F., Nickerson T., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K.M., Rice C.M., Searle S., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Steward C.A., Sycamore N., Tester J., Thomas D.W., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Wilming L., Wray P.W., Wright M.W., Young L., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Beck S., Bentley D.R., Rogers J., Ross M.T.;
"The DNA sequence and analysis of human chromosome 13.";
Nature 428:522-528(2004).
[4]
VARIANTS HPE5 POLY-ALA INSERTION AND PHE-152, AND POLYMORPHISM OF POLY-HIS REGION.
DOI=10.1093/hmg/10.8.791; PubMed=11285244 [NCBI, ExPASy, EBI, Israel, Japan]
Brown L.Y., Odent S., David V., Blayau M., Dubourg C., Apacik C., Delgado M.A., Hall B.D., Reynolds J.F., Sommer A., Wieczorek D., Brown S.A., Muenke M.;
"Holoprosencephaly due to mutations in ZIC2: alanine tract expansion mutations may be caused by parental somatic recombination.";
Hum. Mol. Genet. 10:791-796(2001).
[5]
VARIANTS HPE5 PRO-36 AND PHE-152, AND VARIANTS HIS-239 INS AND HIS-239 DEL.
DOI=10.1002/humu.20056; PubMed=15221788 [NCBI, ExPASy, EBI, Israel, Japan]
Dubourg C., Lazaro L., Pasquier L., Bendavid C., Blayau M., Le Duff F., Durou M.-R., Odent S., David V.;
"Molecular screening of SHH, ZIC2, SIX3, and TGIF genes in patients with features of holoprosencephaly spectrum: mutation review and genotype-phenotype correlations.";
Hum. Mutat. 24:43-51(2004).
[6]
CHARACTERIZATION OF VARIANTS HPE5 PRO-36; PHE-152 AND POLY-ALA INS.
DOI=10.1093/hmg/ddi037; PubMed=15590697 [NCBI, ExPASy, EBI, Israel, Japan]
Brown L., Paraso M., Arkell R., Brown S.;
"In vitro analysis of partial loss-of-function ZIC2 mutations in holoprosencephaly: alanine tract expansion modulates DNA binding and transactivation.";
Hum. Mol. Genet. 14:411-420(2005).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF104902; AAC96325.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF193855; AAG28409.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AL355338; CAH70367.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00030652; -.
RefSeq NP_009060.2; -.
UniGene Hs.653700
3D structure databases
HSSP P08047; 1SP2. [HSSP ENTRY / PDB]
ModBase O95409.
PTM databases
PhosphoSite O95409; -.
Organism-specific databases
GeneCards GC13P099432; -.
HGNC HGNC:12873; ZIC2.
GenAtlas ZIC2.
MIM 603073; gene. [NCBI / EBI]
609637; phenotype. [NCBI / EBI]
Orphanet 2162; Holoprosencephaly.
PharmGKB PA37462; -.
Gene expression databases
ArrayExpress O95409; -.
Bgee O95409; -.
CleanEx HS_ZIC2; -.
GermOnline ENSG00000043355; Homo sapiens.
Ontologies
GO
GO:0005634; Cellular component: nucleus (inferred from electronic annotation from UniProtKB-SubCell).
GO:0003677; Molecular function: DNA binding (inferred from electronic annotation from UniProtKB-KW).
GO:0008270; Molecular function: zinc ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0007420; Biological process: brain development (traceable author statement from ProtInc).
GO:0030154; Biological process: cell differentiation (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR007087; Znf_C2H2.
IPR015880; Znf_C2H2-like.
IPR013087; Znf_C2H2/integrase_DNA-bd.
Graphical view of domain structure.
Gene3D G3DSA:3.30.160.60; Znf_C2H2/integrase_DNA-bd; 2.
Pfam PF00096; zf-C2H2; 3.
Pfam graphical view of domain structure.
ProDom PD000003; Znf_C2H2; 1.
[Domain structure / List of seq. sharing at least 1 domain]
SMART SM00355; ZnF_C2H2; 5.
SMART graphical view of domain structure.
PROSITE PS00028; ZINC_FINGER_C2H2_1; 3.
PS50157; ZINC_FINGER_C2H2_2; 4.
PROSITE graphical view of domain structure (profiles).
Proteomic databases
PeptideAtlas O95409; -.
PRIDE O95409; -.
Genome annotation databases
Ensembl ENSG00000043355; Homo sapiens. [Contig view]
GeneID 7546; -.
KEGG hsa:7546; -.
Phylogenomic databases
HOGENOM O95409; -.
HOVERGEN O95409; -.
OMA O95409; VSSPRTD.
Other
NextBio 29525; -.
SOURCE ZIC2; Homo sapiens.
ProtoNet O95409.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Developmental protein; Differentiation; Disease mutation; DNA-binding; Holoprosencephaly; Metal-binding; Neurogenesis; Nucleus; Polymorphism; Repeat; Zinc; Zinc-finger.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   532  532     Zinc finger protein ZIC 2. PRO_0000047247
ZN_FING   256   291  36     C2H2-type 1; atypical. 
ZN_FING   300   327  28     C2H2-type 2; atypical. 
ZN_FING   333   357  25     C2H2-type 3. 
ZN_FING   363   387  25     C2H2-type 4. 
ZN_FING   393   415  23     C2H2-type 5. 
COMPBIAS   20    23  4     Poly-His. 
COMPBIAS   25    33  9     Poly-Ala. 
COMPBIAS   89    97  9     Poly-Ala. 
COMPBIAS   226   230  5     Poly-Ala. 
COMPBIAS   231   239  9     Poly-His. 
COMPBIAS   456   470  15     Poly-Ala. 
COMPBIAS   490   508  19     Poly-Gly. 
VARIANT   36    36  1     Q -> P (in HPE5; 2-fold increase in luciferase activity). VAR_023793 
VARIANT   152   152  1     D -> F (in HPE5; requires 2 nucleotide substitutions; 50% reduction of luciferase activity). VAR_023794 
VARIANT   239   239  1     H -> HH. VAR_023795
VARIANT   239   239  1     Missing. VAR_023796
VARIANT   470   470  1     A -> AAAAAAAAAAA (in HPE5; near-complete loss of luciferase activity). VAR_008856
CONFLICT   124   128        RGFGD -> ARLPGT (in Ref. 1; AAC96325). 
Sequence information
Length: 532 AA [This is the length of the unprocessed precursor] Molecular weight: 55006 Da [This is the MW of the unprocessed precursor] CRC64: BA3E6455DAF97EAC [This is a checksum on the sequence]
        10         20         30         40         50         60 
MLLDAGPQFP AIGVGSFARH HHHSAAAAAA AAAEMQDREL SLAAAQNGFV DSAAAHMGAF 

        70         80         90        100        110        120 
KLNPGAHELS PGQSSAFTSQ GPGAYPGSAA AAAAAAALGP HAAHVGSYSG PPFNSTRDFL 

       130        140        150        160        170        180 
FRSRGFGDSA PGGGQHGLFG PGAGGLHHAH SDAQGHLLFP GLPEQHGPHG SQNVLNGQMR 

       190        200        210        220        230        240 
LGLPGEVFGR SEQYRQVASP RTDPYSAAQL HNQYGPMNMN MGMNMAAAAA HHHHHHHHHP 

       250        260        270        280        290        300 
GAFFRYMRQQ CIKQELICKW IDPEQLSNPK KSCNKTFSTM HELVTHVSVE HVGGPEQSNH 

       310        320        330        340        350        360 
VCFWEECPRE GKPFKAKYKL VNHIRVHTGE KPFPCPFPGC GKVFARSENL KIHKRTHTGE 

       370        380        390        400        410        420 
KPFQCEFEGC DRRFANSSDR KKHMHVHTSD KPYLCKMCDK SYTHPSSLRK HMKVHESSPQ 

       430        440        450        460        470        480 
GSESSPAASS GYESSTPPGL VSPSAEPQSS SNLSPAAAAA AAAAAAAAAA VSAVHRGGGS 

       490        500        510        520        530 
GSGGAGGGSG GGSGSGGGGG GAGGGGGGSS GGGSGTAGGH SGLSSNFNEW YV 

O95409 in FASTA format

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