ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry O78259


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name RBL_ABIHO
Primary accession number O78259
Secondary accession numbers None
Integrated into Swiss-Prot on July 15, 1999
Sequence was last modified on November 1, 1998 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 50)
Name and origin of the protein
Protein name Ribulose bisphosphate carboxylase large chain [Fragment]
Synonyms RuBisCO large subunit
EC 4.1.1.39
Gene name
Name: rbcL
From
Abies homolepis (Nikko fir) [TaxID: 78261] 
Encoded on Plastid; Chloroplast.
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Abies.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
DOI=10.2307/2411234; AGRICOLA=IND21806043
Tsumura Y., Suyama Y.;
"Differentiation of mitochondrial DNA polymorphisms in populations of five Japanese Abies species.";
Evolution 52:1031-1042(1998).
Comments
  • FUNCTION: RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site (By similarity).
  • CATALYTIC ACTIVITY: 2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.
  • CATALYTIC ACTIVITY: 3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.
  • COFACTOR: Binds 1 magnesium ion per subunit (By similarity).
  • SUBUNIT: Heterohexadecamer of 8 large chains and 8 small chains; disulfide-linked. The disulfide link is formed within the large subunit homodimers (By similarity).
  • SUBCELLULAR LOCATION: Plastid, chloroplast.
  • PTM: The disulfide bond which can form in the large chain dimeric partners within the hexadecamer appears to be associated with oxidative stress and protein turnover (By similarity).
  • MISCELLANEOUS: The basic functional RuBisCO is composed of a large chain homodimer in a "head-to-tail" conformation. In form I RuBisCO this homodimer is arranged in a barrel-like tetramer with the small subunits forming a tetrameric "cap" on each end of the "barrel" (By similarity).
  • SIMILARITY: Belongs to the RuBisCO large chain family. Type I subfamily.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AB015648; BAA31205.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
3D structure databases
SMR O78259; 4-443.
ModBase O78259.
Ontologies
GO
GO:0009573; Cellular component: chloroplast ribulose bisphosphate carboxylase complex (inferred from electronic annotation from InterPro).
GO:0000287; Molecular function: magnesium ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0004497; Molecular function: monooxygenase activity (inferred from electronic annotation from UniProtKB-KW).
GO:0016984; Molecular function: ribulose-bisphosphate carboxylase activity (inferred from electronic annotation from HAMAP).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
GO:0009853; Biological process: photorespiration (inferred from electronic annotation from UniProtKB-KW).
GO:0019253; Biological process: reductive pentose-phosphate cycle (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
HAMAP MF_01338; -; 1.
PBIL [Tree]
InterPro IPR000685; RuBisCO_lsu_C.
IPR017443; RuBisCO_lsu_fd_N.
IPR017444; RuBisCO_lsu_N.
Graphical view of domain structure.
Gene3D G3DSA:3.20.20.110; RuBisCO_large; 1.
G3DSA:3.30.70.150; RuBisCO_large; 1.
Pfam PF00016; RuBisCO_large; 1.
PF02788; RuBisCO_large_N; 1.
Pfam graphical view of domain structure.
PROSITE PS00157; RUBISCO_LARGE; 1.
Other
ProtoNet O78259.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Calvin cycle; Carbon dioxide fixation; Chloroplast; Lyase; Magnesium; Metal-binding; Methylation; Monooxygenase; Oxidoreductase; Photorespiration; Photosynthesis; Plastid.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   <1   >443  >443     Ribulose bisphosphate carboxylase large chain. PRO_0000062332
ACT_SITE   168    168        Proton acceptor (By similarity). 
ACT_SITE   287    287        Proton acceptor (By similarity). 
METAL   194    194        Magnesium; via carbamate group (By similarity). 
METAL   196    196        Magnesium (By similarity). 
METAL   197    197        Magnesium (By similarity). 
BINDING   116    116        Substrate; in homodimeric partner (By similarity). 
BINDING   166    166        Substrate (By similarity). 
BINDING   170    170        Substrate (By similarity). 
BINDING   288    288        Substrate (By similarity). 
BINDING   320    320        Substrate (By similarity). 
BINDING   372    372        Substrate (By similarity). 
SITE   327    327  1     Transition state stabilizer (By similarity). 
MOD_RES   7      7        N6,N6,N6-trimethyllysine (By similarity). 
MOD_RES   194    194        N6-carboxylysine (By similarity). 
DISULFID   240    240        Interchain; in linked form (By similarity). 
NON_TER   1      1         
NON_TER   443    443         
Sequence information
Length: 443 AA [This is the length of the partial sequence of the unprocessed precursor] Molecular weight: 48936 Da [This is the MW of the partial sequence of the unprocessed precursor] CRC64: 052EB0E18B60DE82 [This is a checksum on the sequence]
        10         20         30         40         50         60 
KASVGFKAGV KDYRLTYYTP EYQTKDTDIL AAFRVTPQPG VPPEEAGAAV AAESSTGTWT 

        70         80         90        100        110        120 
TVWTDGLTSL DRYKGRCYDI EPVAGEESQF IAYVAYPLDL FEEGSVTNLF TSIVGNVFGF 

       130        140        150        160        170        180 
KALRALRLED LRIPPAYSKT FQGPPHGIQV ERDKLNKYGR PLLGCTIKPK LGLSAKNYGR 

       190        200        210        220        230        240 
AVYECLRGGL DFTKDDENVN SQPFMRWRDR FVFCAEAINK AQAETGEIKG HYLNATAGTC 

       250        260        270        280        290        300 
EEMMKRAIFA RELGVPIVMH DYLTGGFTAN TSLAHYCRDN GLLLHIHRAM HAVIDRQRNH 

       310        320        330        340        350        360 
GMHFRVLAKA LRMSGGDHVH AGTVVGKLEG ERDVTLGFVD LLRDDFIEKD RSRGIYFTQD 

       370        380        390        400        410        420 
WVSMPGVLPV ASGGIHVWHM PALTEIFGDD SVLQFGGGTL GHPWGNAPGA VTNRVAVEAC 

       430        440 
VQARNEGRDL AREGNEVIRE ACK 

O78259 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
 Hosted by ca flag CBR Canada Mirror sites: Australia  Brazil  China  Korea  Switzerland
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!