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UniProtKB/Swiss-Prot entry O58316

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name NIKR_PYRHO
Primary accession number O58316
Secondary accession numbers None
Integrated into Swiss-Prot on November 2, 2001
Sequence was last modified on August 1, 1998 (Sequence version 1)
Annotations were last modified on    June 16, 2009 (Entry version 57)
Name and origin of the protein
Protein name Putative nickel-responsive regulator
Synonyms None
Gene name
OrderedLocusNames: PH0601
From
Pyrococcus horikoshii [TaxID: 53953] [HAMAP proteome]
Taxonomy Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.
Protein existence 1: Evidence at protein level;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=OT3;
DOI=10.1093/dnares/5.2.55; PubMed=9679194 [NCBI, ExPASy, EBI, Israel, Japan]
Kawarabayasi Y., Sawada M., Horikawa H., Haikawa Y., Hino Y., Yamamoto S., Sekine M., Baba S., Kosugi H., Hosoyama A., Nagai Y., Sakai M., Ogura K., Otsuka R., Nakazawa H., Takamiya M., Ohfuku Y., Funahashi T., Tanaka T., Kudoh Y., Yamazaki J., Kushida N., Oguchi A., Aoki K., Yoshizawa T., Nakamura Y., Robb F.T., Horikoshi K., Masuchi Y., Shizuya H., Kikuchi H.;
"Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.";
DNA Res. 5:55-76(1998).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
BA000001; BAA29690.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR E71175; E71175.
RefSeq NP_142565.1; -.
3D structure databases
PDB
2BJ1; X-ray; 3.00 A; A/B=1-138.[ExPASy / RCSB / EBI]
2BJ3; X-ray; 2.20 A; A/B/C/D=1-138.[ExPASy / RCSB / EBI]
2BJ7; X-ray; 2.10 A; A/B=1-138.[ExPASy / RCSB / EBI]
2BJ8; X-ray; 2.10 A; A/B=1-138.[ExPASy / RCSB / EBI]
2BJ9; X-ray; 3.00 A; A/B=1-138.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 2BJ1; -.
2BJ3; -.
2BJ7; -.
2BJ8; -.
2BJ9; -.
ModBase O58316.
Ontologies
GO
GO:0016151; Molecular function: nickel ion binding (inferred from electronic annotation from HAMAP).
GO:0003700; Molecular function: transcription factor activity (inferred from electronic annotation from HAMAP).
GO:0006355; Biological process: regulation of transcription, DNA-dependent (inferred from electronic annotation from HAMAP).
GO:0006350; Biological process: transcription (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
HAMAP MF_00476; -; 1.
PBIL [Tree]
InterPro IPR013321; Arc_rbn_hlx_hlx.
IPR002145; CopG_DNA_bd.
IPR014864; TF_NikR_Ni-bd_C.
Graphical view of domain structure.
Gene3D G3DSA:1.10.1220.10; Arc_rbn_hlx_hlx; 1.
G3DSA:3.30.70.1150; NikR_bd_C; 1.
Pfam PF08753; NikR_C; 1.
PF01402; RHH_1; 1.
Pfam graphical view of domain structure.
Genome annotation databases
GeneID 1442936; -.
GenomeReviews BA000001_GR; PH0601.
KEGG pho:PH0601; -.
NMPDR fig|70601.1.peg.589; -.
Phylogenomic databases
HOGENOM O58316; -.
OMA O58316; DEHNCLE.
Genome annotation databases
CMR O58316; PH0601.
Other
ProtoNet O58316.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Complete proteome; DNA-binding; Metal-binding; Nickel; Transcription; Transcription regulation.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   138  138     Putative nickel-responsive regulator. PRO_0000139312
METAL   78    78        Nickel (By similarity). 
METAL   89    89        Nickel (By similarity). 
METAL   91    91        Nickel (By similarity). 
METAL   97    97        Nickel (By similarity). 
STRAND   3    11  9      
HELIX   12    25  14      
HELIX   30    45  16      
HELIX   46    48  3      
STRAND   53    63  11      
HELIX   69    79  11      
TURN   80    83  4      
STRAND   84    91  8      
STRAND   93   106  14      
HELIX   107   119  13      
STRAND   123   133  11      
Sequence information
Length: 138 AA [This is the length of the unprocessed precursor] Molecular weight: 15806 Da [This is the MW of the unprocessed precursor] CRC64: A4B8715636C019FE [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MELIRFSISI PSKLLEKFDQ IIEEIGYENR SEAIRDLIRD FIIRHEWEVG NEEVAGTITI 

        70         80         90        100        110        120 
VYNHDEGDVV KALLDLQHEY LDEIISSLHV HMDEHNCLEV IVVKGEAKKI KMIADKLLSL 

       130 
KGVKHGKLVM TSTGKELV
O58316 in FASTA format

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