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UniProtKB/Swiss-Prot entry O57708


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name GCSPA_PYRHO
Primary accession number O57708
Secondary accession numbers None
Integrated into Swiss-Prot on October 3, 2003
Sequence was last modified on August 1, 1998 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 42)
Name and origin of the protein
Protein name Probable glycine dehydrogenase [decarboxylating] subunit 1
Synonyms EC 1.4.4.2
Glycine decarboxylase subunit 1
Glycine cleavage system P-protein subunit 1
Gene name
Name: gcvPA
OrderedLocusNames: PH1995
From
Pyrococcus horikoshii [TaxID: 53953] [HAMAP proteome]
Taxonomy Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=OT3;
DOI=10.1093/dnares/5.2.55; PubMed=9679194 [NCBI, ExPASy, EBI, Israel, Japan]
Kawarabayasi Y., Sawada M., Horikawa H., Haikawa Y., Hino Y., Yamamoto S., Sekine M., Baba S., Kosugi H., Hosoyama A., Nagai Y., Sakai M., Ogura K., Otsuka R., Nakazawa H., Takamiya M., Ohfuku Y., Funahashi T., Tanaka T., Kudoh Y., Yamazaki J., Kushida N., Oguchi A., Aoki K., Yoshizawa T., Nakamura Y., Robb F.T., Horikoshi K., Masuchi Y., Shizuya H., Kikuchi H.;
"Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.";
DNA Res. 5:55-76(1998).
Comments
  • FUNCTION: The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (By similarity).
  • CATALYTIC ACTIVITY: Glycine + H-protein-lipoyllysine = H-protein-S-aminomethyldihydrolipoyllysine + CO2.
  • SUBUNIT: The glycine cleavage system is composed of four proteins: P, T, L and H. In this organism, the P 'protein' is an heterodimer of two subunits (By similarity).
  • SIMILARITY: Belongs to the gcvP family. N-terminal subunit subfamily.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
BA000001; BAA31122.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR C71216; C71216.
RefSeq NP_143817.1; -.
3D structure databases
ModBase O57708.
Ontologies
GO
GO:0004375; Molecular function: glycine dehydrogenase (decarboxylating) activity (inferred from electronic annotation from InterPro).
GO:0030170; Molecular function: pyridoxal phosphate binding (inferred from electronic annotation from InterPro).
GO:0019464; Biological process: glycine decarboxylation via glycine cleavage system (inferred from electronic annotation from HAMAP).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
HAMAP MF_00712; -; 1.
PBIL [Tree]
InterPro IPR003437; GDC-P.
IPR015421; PyrdxlP-dep_Trfase_major_sub1.
Graphical view of domain structure.
Gene3D G3DSA:3.40.640.10; PyrdxlP-dep_Trfase_major_sub1; 1.
PANTHER PTHR11773; GDC-P; 1.
Pfam PF02347; GDC-P; 1.
Pfam graphical view of domain structure.
Genome annotation databases
GeneID 1442838; -.
GenomeReviews BA000001_GR; PH1995.
KEGG pho:PH1995; -.
NMPDR fig|70601.1.peg.1952; -.
Phylogenomic databases
HOGENOM O57708; -.
Genome annotation databases
CMR O57708; PH1995.
Other
ProtoNet O57708.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Oxidoreductase.
Features
SEVIEWER logo Feature table viewer
KeyFrom To Length Description FTId
CHAIN   1   449  449     Probable glycine dehydrogenase [decarboxylating] subunit 1. PRO_0000166986
Sequence information
Length: 449 AA [This is the length of the unprocessed precursor] Molecular weight: 50357 Da [This is the MW of the unprocessed precursor] CRC64: C7DE610E8A0254DC [This is a checksum on the sequence]
        10         20         30         40         50         60 
MGNHYIPNSA HKEEMLKEIG LSSIEELFAD IPEKFIKEEL NLPEGKSEYE VFLEMNEILE 

        70         80         90        100        110        120 
KNKTVLEMPT FLGAGTYFHY IPAHVKHLIE RSEFLTSYTP YQPEISQGML QALFEYQSLI 

       130        140        150        160        170        180 
AELVGLPVVN SSMYDWGTAM AEAALMTVRL HKGKRKKFVV PKHTHPERLQ VLRTYTRGPE 

       190        200        210        220        230        240 
VEIVTVNWNE RGQVDVEDLK EKVKDAAGVY IEIPNFFGLL EEEIREVGEI AHEAGAYFVV 

       250        260        270        280        290        300 
GVDPTILGIV EAPGELGADI VVGEASYFGN PMNFGGPRAG IFAVKNDMKL IRQMPGRIIG 

       310        320        330        340        350        360 
MTKDAEGKRA FVMTLQTREQ HIRRAKATSN ICSNEALVAV AAAIHIASLG PKGIRELGEV 

       370        380        390        400        410        420 
ILKNTAYLKK RLSEVAEIPF DGVNFKDVLV RFDKPYREIH EELLKRNIHG GYYVGSHFPE 

       430        440 
LGEAALFAAT ETTRKEWVDA LISALKEVI 

O57708 in FASTA format

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