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UniProtKB/Swiss-Prot entry O43490


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name PROM1_HUMAN
Primary accession number O43490
Secondary accession numbers None
Integrated into Swiss-Prot on February 21, 2001
Sequence was last modified on June 1, 1998 (Sequence version 1)
Annotations were last modified on    June 16, 2009 (Entry version 83)
Name and origin of the protein
Protein name Prominin-1 [Precursor]
Synonyms Prominin-like protein 1
Antigen AC133
CD133 antigen
Gene name
Name: PROM1
Synonyms: PROML1
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND PROTEIN SEQUENCE OF 31-42; 200-211; 280-291 AND 641-656.
TISSUE=Fetal liver, and Retinoblastoma;
PubMed=9389721 [NCBI, ExPASy, EBI, Israel, Japan]
Miraglia S., Godfrey W., Yin A.H., Atkins K., Warnke R., Holden J.T., Bray R.A., Waller E.K., Buck D.W.;
"A novel five-transmembrane hematopoietic stem cell antigen: isolation, characterization, and molecular cloning.";
Blood 90:5013-5021(1997).
[2]
CHARACTERIZATION.
TISSUE=Fetal liver;
PubMed=9389720 [NCBI, ExPASy, EBI, Israel, Japan]
Yin A.H., Miraglia S., Zanjani E.D., Almeida-Porada G., Ogawa M., Leary A.G., Olweus J., Kearney J., Buck D.W.;
"AC133, a novel marker for human hematopoietic stem and progenitor cells.";
Blood 90:5002-5012(1997).
[3]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-266; SER-275 AND THR-276, AND MASS SPECTROMETRY.
TISSUE=Epithelium;
DOI=10.1016/j.cell.2006.09.026; PubMed=17081983 [NCBI, ExPASy, EBI, Israel, Japan]
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M.;
"Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.";
Cell 127:635-648(2006).
[4]
TISSUE SPECIFICITY.
DOI=10.1007/s00418-007-0334-2; PubMed=17874118 [NCBI, ExPASy, EBI, Israel, Japan]
Jaszai J., Janich P., Farkas L.M., Fargeas C.A., Huttner W.B., Corbeil D.;
"Differential expression of prominin-1 (CD133) and prominin-2 in major cephalic exocrine glands of adult mice.";
Histochem. Cell Biol. 128:409-419(2007).
[5]
INVOLVEMENT IN RP41.
DOI=10.1093/hmg/9.1.27; PubMed=10587575 [NCBI, ExPASy, EBI, Israel, Japan]
Maw M.A., Corbeil D., Koch J., Hellwig A., Wilson-Wheeler J.C., Bridges R.J., Kumaramanickavel G., John S., Nancarrow D., Roeper K., Weigmann A., Huttner W.B., Denton M.J.;
"A frameshift mutation in prominin (mouse)-like 1 causes human retinal degeneration.";
Hum. Mol. Genet. 9:27-34(2000).
[6]
INVOLVEMENT IN RP41.
DOI=10.1007/s00439-007-0395-2; PubMed=17605048 [NCBI, ExPASy, EBI, Israel, Japan]
Zhang Q., Zulfiqar F., Xiao X., Riazuddin S.A., Ahmad Z., Caruso R., MacDonald I., Sieving P., Riazuddin S., Hejtmancik J.F.;
"Severe retinitis pigmentosa mapped to 4p15 and associated with a novel mutation in the PROM1 gene.";
Hum. Genet. 122:293-299(2007).
[7]
VARIANT CORD12/STGD4/MCDR2 CYS-373, INTERACTION WITH PCDH21 AND ACTIN, AND CHARACTERIZATION OF VARIANT CORD12/STGD4/MCDR2 CYS-373.
DOI=10.1172/JCI35891; PubMed=18654668 [NCBI, ExPASy, EBI, Israel, Japan]
Yang Z., Chen Y., Lillo C., Chien J., Yu Z., Michaelides M., Klein M., Howes K.A., Li Y., Kaminoh Y., Chen H., Zhao C., Chen Y., Al-Sheikh Y.T., Karan G., Corbeil D., Escher P., Kamaya S., Li C., Johnson S., Frederick J.M., Zhao Y., Wang C., Cameron D.J., Huttner W.B., Schorderet D.F., Munier F.L., Moore A.T., Birch D.G., Baehr W., Hunt D.M., Williams D.S., Zhang K.;
"Mutant prominin 1 found in patients with macular degeneration disrupts photoreceptor disk morphogenesis in mice.";
J. Clin. Invest. 118:2908-2916(2008).
Comments
  • SUBUNIT: Interacts with PCDH21 and with actin filaments.
  • SUBCELLULAR LOCATION: Apical cell membrane; Multi-pass membrane protein (By similarity). Cell projection, microvillus membrane; Multi-pass membrane protein (By similarity).
  • TISSUE SPECIFICITY: Selectively expressed on CD34 hematopoietic stem and progenitor cells in adult and fetal bone marrow, fetal liver, cord blood and adult peripheral blood. Not detected on other blood cells. Also expressed in a number of non-lymphoid tissues including retina, pancreas, placenta, kidney, liver, lung, brain and heart. Found in saliva within small membrane particles.
  • PTM: Glycosylated.
  • DISEASE: Defects in PROM1 are the cause of retinitis pigmentosa type 41 (RP41) [MIM:612095]; also known as retinal degeneration autosomal recessive prominin-related. RP is a retinal dystrophy belonging to the group of pigmentary retinopathies. RP is characterized by retinal pigment deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well.
  • DISEASE: Defects in PROM1 are the cause of cone-rod dystrophy type 12 (CORD12) [MIM:612657]. CORD12 is an inherited retinal dystrophy characterized by retinal pigment deposits visible on fundus examination, predominantly in the macular region, and initial loss of cone photoreceptors followed by rod degeneration. This leads to decreased visual acuity and sensitivity in the central visual field, followed by loss of peripheral vision. Severe loss of vision occurs earlier than in retinitis pigmentosa.
  • DISEASE: Defects in PROM1 are the cause of Stargardt disease type 4 (STGD4) [MIM:603786]. Stargardt disease is the most common hereditary macular degeneration. It is characterized by decreased central vision, atrophy of the macula and underlying retinal pigment epithelium, and frequent presence of prominent flecks in the posterior pole of the retina.
  • DISEASE: Defects in PROM1 are the cause of retinal macular dystrophy type 2 (MCDR2) [MIM:608051]. MCDR2 is a bull's-eye macular dystrophy characterized by bilateral annular atrophy of retinal pigment epithelium at the macula.
  • SIMILARITY: Belongs to the prominin family.
  • WEB RESOURCE: Name=Mutations of the PROM1 gene; Note=Retina International's Scientific Newsletter; URL="http://www.retina-international.com/sci-news/promlmut.htm";.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF027208; AAB92514.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00012540; -.
PIR T09050; T09050.
RefSeq NP_006008.1; -.
UniGene Hs.614734
3D structure databases
ModBase O43490.
PTM databases
PhosphoSite O43490; -.
Organism-specific databases
GeneCards GC04M015578; -.
H-InvDB HIX0004116; -.
HGNC HGNC:9454; PROM1.
GenAtlas PROM1.
HPA CAB011525; -.
MIM 603786; phenotype. [NCBI / EBI]
604365; gene. [NCBI / EBI]
608051; phenotype. [NCBI / EBI]
612095; phenotype. [NCBI / EBI]
612657; phenotype. [NCBI / EBI]
Orphanet 791; Retinitis pigmentosa.
827; Stargardt disease.
PharmGKB PA33807; -.
Gene expression databases
CleanEx HS_PROM1; -.
GermOnline ENSG00000007062; Homo sapiens.
Ontologies
GO
GO:0016324; Cellular component: apical plasma membrane (inferred from electronic annotation from UniProtKB-SubCell).
GO:0009986; Cellular component: cell surface (inferred from direct assay from UniProtKB).
GO:0005887; Cellular component: integral to plasma membrane (traceable author statement from ProtInc).
GO:0031528; Cellular component: microvillus membrane (inferred from electronic annotation from UniProtKB-SubCell).
GO:0050896; Biological process: response to stimulus (inferred from electronic annotation from UniProtKB-KW).
GO:0007601; Biological process: visual perception (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR008795; Prominin.
Graphical view of domain structure.
PANTHER PTHR22730; Prominin; 1.
Pfam PF05478; Prominin; 1.
Pfam graphical view of domain structure.
Proteomic databases
PRIDE O43490; -.
Genome annotation databases
Ensembl ENSG00000007062; Homo sapiens. [Contig view]
GeneID 8842; -.
KEGG hsa:8842; -.
Phylogenomic databases
HOGENOM O43490; -.
HOVERGEN O43490; -.
Other
NextBio 33194; -.
SOURCE PROM1; Homo sapiens.
ProtoNet O43490.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Cell membrane; Cell projection; Cone-rod dystrophy; Direct protein sequencing; Disease mutation; Glycoprotein; Membrane; Phosphoprotein; Polymorphism; Retinitis pigmentosa; Sensory transduction; Signal; Stargardt disease; Transmembrane; Vision.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    19  19     Potential. 
CHAIN   20   865  846     Prominin-1. PRO_0000025813
TOPO_DOM   20   108  89     Extracellular (Potential). 
TRANSMEM   109   129  21     Potential. 
TOPO_DOM   130   157  28     Cytoplasmic (Potential). 
TRANSMEM   158   178  21     Potential. 
TOPO_DOM   179   433  255     Extracellular (Potential). 
TRANSMEM   434   454  21     Potential. 
TOPO_DOM   455   486  32     Cytoplasmic (Potential). 
TRANSMEM   487   507  21     Potential. 
TOPO_DOM   508   792  285     Extracellular (Potential). 
TRANSMEM   793   813  21     Potential. 
TOPO_DOM   814   865  52     Cytoplasmic (Potential). 
MOD_RES   266   266        Phosphothreonine. 
MOD_RES   275   275        Phosphoserine. 
MOD_RES   276   276        Phosphothreonine. 
CARBOHYD   220   220        N-linked (GlcNAc...) (Potential). 
CARBOHYD   274   274        N-linked (GlcNAc...) (Potential). 
CARBOHYD   395   395        N-linked (GlcNAc...) (Potential). 
CARBOHYD   414   414        N-linked (GlcNAc...) (Potential). 
CARBOHYD   548   548        N-linked (GlcNAc...) (Potential). 
CARBOHYD   580   580        N-linked (GlcNAc...) (Potential). 
CARBOHYD   729   729        N-linked (GlcNAc...) (Potential). 
CARBOHYD   730   730        N-linked (GlcNAc...) (Potential). 
VARIANT   31    31  1     A -> G. VAR_010382 
VARIANT   31    31  1     A -> S. VAR_010383 
VARIANT   373   373  1     R -> C (in CORD12, STGD4 and MCDR2; affects the interaction with PCDH21 and actin). VAR_057961 
CONFLICT   200   200        D -> A (in Ref. 1; AA sequence). 
CONFLICT   200   200        D -> P (in Ref. 1; AA sequence). 
CONFLICT   284   284        S -> D (in Ref. 1; AA sequence). 
CONFLICT   288   288        S -> R (in Ref. 1; AA sequence). 
Sequence information
Length: 865 AA [This is the length of the unprocessed precursor] Molecular weight: 97202 Da [This is the MW of the unprocessed precursor] CRC64: D21CBC05ADB2DEDF [This is a checksum on the sequence]
        10         20         30         40         50         60 
MALVLGSLLL LGLCGNSFSG GQPSSTDAPK AWNYELPATN YETQDSHKAG PIGILFELVH 

        70         80         90        100        110        120 
IFLYVVQPRD FPEDTLRKFL QKAYESKIDY DKPETVILGL KIVYYEAGII LCCVLGLLFI 

       130        140        150        160        170        180 
ILMPLVGYFF CMCRCCNKCG GEMHQRQKEN GPFLRKCFAI SLLVICIIIS IGIFYGFVAN 

       190        200        210        220        230        240 
HQVRTRIKRS RKLADSNFKD LRTLLNETPE QIKYILAQYN TTKDKAFTDL NSINSVLGGG 

       250        260        270        280        290        300 
ILDRLRPNII PVLDEIKSMA TAIKETKEAL ENMNSTLKSL HQQSTQLSSS LTSVKTSLRS 

       310        320        330        340        350        360 
SLNDPLCLVH PSSETCNSIR LSLSQLNSNP ELRQLPPVDA ELDNVNNVLR TDLDGLVQQG 

       370        380        390        400        410        420 
YQSLNDIPDR VQRQTTTVVA GIKRVLNSIG SDIDNVTQRL PIQDILSAFS VYVNNTESYI 

       430        440        450        460        470        480 
HRNLPTLEEY DSYWWLGGLV ICSLLTLIVI FYYLGLLCGV CGYDRHATPT TRGCVSNTGG 

       490        500        510        520        530        540 
VFLMVGVGLS FLFCWILMII VVLTFVFGAN VEKLICEPYT SKELFRVLDT PYLLNEDWEY 

       550        560        570        580        590        600 
YLSGKLFNKS KMKLTFEQVY SDCKKNRGTY GTLHLQNSFN ISEHLNINEH TGSISSELES 

       610        620        630        640        650        660 
LKVNLNIFLL GAAGRKNLQD FAACGIDRMN YDSYLAQTGK SPAGVNLLSF AYDLEAKANS 

       670        680        690        700        710        720 
LPPGNLRNSL KRDAQTIKTI HQQRVLPIEQ SLSTLYQSVK ILQRTGNGLL ERVTRILASL 

       730        740        750        760        770        780 
DFAQNFITNN TSSVIIEETK KYGRTIIGYF EHYLQWIEFS ISEKVASCKP VATALDTAVD 

       790        800        810        820        830        840 
VFLCSYIIDP LNLFWFGIGK ATVFLLPALI FAVKLAKYYR RMDSEDVYDD VETIPMKNME 

       850        860 
NGNNGYHKDH VYGIHNPVMT SPSQH 

O43490 in FASTA format

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