ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry O35235


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name TNF11_MOUSE
Primary accession number O35235
Secondary accession numbers O35306 Q9JJK8 Q9JJK9 Q9R1Y0
Integrated into Swiss-Prot on January 24, 2001
Sequence was last modified on January 1, 1998 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 90)
Name and origin of the protein
Protein name Tumor necrosis factor ligand superfamily member 11
Synonyms Receptor activator of nuclear factor kappa B ligand
RANKL
TNF-related activation-induced cytokine
TRANCE
Osteoprotegerin ligand
OPGL
Osteoclast differentiation factor
ODF
CD254 antigen
Contains Tumor necrosis factor ligand superfamily member 11, membrane form
Tumor necrosis factor ligand superfamily member 11, soluble form
Gene name
Name: Tnfsf11
Synonyms: Opgl, Rankl, Trance
From
Mus musculus (Mouse) [TaxID: 10090] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
TISSUE=Hybridoma;
DOI=10.1074/jbc.272.40.25190; PubMed=9312132 [NCBI, ExPASy, EBI, Israel, Japan]
Wong B.R., Rho J., Arron J., Robinson E., Orlinick J., Chao M., Kalachikov S., Cayani E., Bartlett F.S. III, Frankel W.N., Lee S.Y., Choi Y.;
"TRANCE is a novel ligand of the tumor necrosis factor receptor family that activates c-Jun N-terminal kinase in T cells.";
J. Biol. Chem. 272:25190-25194(1997).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
TISSUE=Thymic lymphoma;
DOI=10.1038/36593; PubMed=9367155 [NCBI, ExPASy, EBI, Israel, Japan]
Anderson D.M., Maraskovsky E., Billingsley W.L., Dougall W.C., Tometsko M.E., Roux E.R., Teepe M.C., DuBose R.F., Cosman D., Galibert L.;
"A homologue of the TNF receptor and its ligand enhance T-cell growth and dendritic-cell function.";
Nature 390:175-179(1997).
[3]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
TISSUE=Bone marrow;
DOI=10.1016/S0092-8674(00)81569-X; PubMed=9568710 [NCBI, ExPASy, EBI, Israel, Japan]
Lacey D.L., Timms E., Tan H.-L., Kelley M.J., Dunstan C.R., Burgess T., Elliott R., Colombero A., Elliott G., Scully S., Hsu H., Sullivan J., Hawkins N., Davy E., Capparelli C., Eli A., Qian Y.-X., Kaufman S., Sarosi I., Shalhoub V., Senaldi G., Guo J., Delaney J., Boyle W.J.;
"Osteoprotegerin ligand is a cytokine that regulates osteoclast differentiation and activation.";
Cell 93:165-176(1998).
[4]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
TISSUE=Bone marrow stroma;
DOI=10.1073/pnas.95.7.3597; PubMed=9520411 [NCBI, ExPASy, EBI, Israel, Japan]
Yasuda H., Shima N., Nakagawa N., Yamaguchi K., Kinosaki M., Mochizuki S., Tomoyasu A., Yano K., Goto M., Murakami A., Tsuda E., Morinaga T., Higashio K., Udagawa N., Takahashi N., Suda T.;
"Osteoclast differentiation factor is a ligand for osteoprotegerin/osteoclastogenesis-inhibitory factor and is identical to TRANCE/RANKL.";
Proc. Natl. Acad. Sci. U.S.A. 95:3597-3602(1998).
[5]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1).
STRAIN=129;
DOI=10.1016/S0378-1119(99)00025-6; PubMed=10196481 [NCBI, ExPASy, EBI, Israel, Japan]
Kodaira K., Kodaira K., Mizuno A., Yasuda H., Shima N., Murakami A., Ueda M., Higashio K.;
"Cloning and characterization of the gene encoding mouse osteoclast differentiation factor.";
Gene 230:121-127(1999).
[6]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2 AND 3).
DOI=10.1210/en.142.4.1419; PubMed=11250921 [NCBI, ExPASy, EBI, Israel, Japan]
Ikeda T., Kasai M., Utsuyama M., Hirokawa K.;
"Determination of three isoforms of the receptor activator of nuclear factor-kappaB ligand and their differential expression in bone and thymus.";
Endocrinology 142:1419-1426(2001).
[7]
PROTEIN SEQUENCE OF 139-147, PROTEOLYTIC PROCESSING, AND GLYCOSYLATION.
DOI=10.1074/jbc.274.19.13613; PubMed=10224132 [NCBI, ExPASy, EBI, Israel, Japan]
Lum L., Wong B.R., Josien R., Becherer J.D., Erdjument-Bromage H., Schloendorff J., Tempst P., Choi Y., Blobel C.P.;
"Evidence for a role of a tumor necrosis factor-alpha (TNF-alpha)-converting enzyme-like protease in shedding of TRANCE, a TNF family member involved in osteoclastogenesis and dendritic cell survival.";
J. Biol. Chem. 274:13613-13618(1999).
[8]
X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS) OF 158-316.
PubMed=11581298 [NCBI, ExPASy, EBI, Israel, Japan]
Lam J., Nelson C.A., Ross F.P., Teitelbaum S.L., Fremont D.H.;
"Crystal structure of the TRANCE/RANKL cytokine reveals determinants of receptor-ligand specificity.";
J. Clin. Invest. 108:971-979(2001).
[9]
X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS) OF 137-316.
DOI=10.1074/jbc.M106525200; PubMed=11733492 [NCBI, ExPASy, EBI, Israel, Japan]
Ito S., Wakabayashi K., Ubukata O., Hayashi S., Okada F., Hata T.;
"Crystal structure of the extracellular domain of mouse RANK ligand at 2.2-A resolution.";
J. Biol. Chem. 277:6631-6636(2002).
Comments
  • FUNCTION: Cytokine that binds to TNFRSF11B/OPG and to TNFRSF11A/RANK. Osteoclast differentiation and activation factor. Augments the ability of dendritic cells to stimulate naive T-cell proliferation. May be an important regulator of interactions between T-cells and dendritic cells and may play a role in the regulation of the T-cell-dependent immune response. May also play an important role in enhanced bone-resorption in humoral hypercalcemia of malignancy.
  • SUBUNIT: Homotrimer.
  • SUBCELLULAR LOCATION: Isoform 1: Cell membrane; Single-pass type II membrane protein.
  • SUBCELLULAR LOCATION: Isoform 2: Cell membrane; Single-pass type II membrane protein.
  • SUBCELLULAR LOCATION: Isoform 3: Cytoplasm.
  • SUBCELLULAR LOCATION: Tumor necrosis factor ligand superfamily member 11, soluble form: Secreted.
  • ALTERNATIVE PRODUCTS: 3 named isoforms [FASTA] produced by alternative splicing.
    Name1
    Isoform IDO35235-1
    This is the isoform sequence displayed in this entry.
    Name2
    Isoform IDO35235-2
    Features which should be applied to build the isoform sequence: VSP_006449.
    Name3
    Isoform IDO35235-3
    Features which should be applied to build the isoform sequence: VSP_006448.
  • TISSUE SPECIFICITY: Highly expressed in thymus and lymph nodes, but not in non-lymphoid tissues and is abundantly expressed in T-cells but not in B-cells. A high level expression is also seen in the trabecular bone and lung.
  • PTM: N-glycosylated.
  • PTM: The soluble form of isoform 1 derives from the membrane form by proteolytic processing. The cleavage may be catalyzed by ADAM17. A further shorter soluble form was observed.
  • DISEASE: Deficiency in Tnfsf11 results in failure to form lobulo-alveolar mammary structures during pregnancy, resulting in death of newborns. Trance-deficient mice show severe osteopetrosis, with no osteoclasts, marrow spaces, or tooth eruption, and exhibit profound growth retardation at several skeletal sites, including the limbs, skull, and vertebrae and have marked chondrodysplasia, with thick, irregular growth plates and a relative increase in hypertrophic chondrocytes.
  • SIMILARITY: Belongs to the tumor necrosis factor family.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF013170; AAC71061.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF019048; AAB86812.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF053713; AAC40113.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB008426; BAA25425.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB022039; BAA36970.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB032771; BAA97257.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB032772; BAA97258.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB036798; BAA97259.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
UniGene Mm.249221
3D structure databases
PDB
1IQA; X-ray; 2.20 A; A/B/C=157-316.[ExPASy / RCSB / EBI]
1JTZ; X-ray; 2.60 A; X/Y/Z=156-316.[ExPASy / RCSB / EBI]
1S55; X-ray; 1.90 A; A/B/C=161-316.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1IQA; -.
1JTZ; -.
1S55; -.
ModBase O35235.
Organism-specific databases
MGI MGI:1100089; Tnfsf11.
Gene expression databases
ArrayExpress O35235; -.
GermOnline ENSMUSG00000022015; Mus musculus.
Ontologies
GO
GO:0005515; Molecular function: protein binding (inferred from physical interaction from MGI).
GO:0045453; Biological process: bone resorption (inferred from direct assay from MGI).
GO:0048535; Biological process: lymph node development (traceable author statement from MGI).
GO:0009887; Biological process: organ morphogenesis (inferred from mutant phenotype from MGI).
GO:0001503; Biological process: ossification (inferred from mutant phenotype from MGI).
GO:0045672; Biological process: positive regulation of osteoclast differentiation (inferred from direct assay from MGI).
GO:0051260; Biological process: protein homooligomerization (inferred from direct assay from MGI).
QuickGo view.
Family and domain databases
InterPro IPR017355; TNF10_TNF11.
IPR006052; TNF_family.
IPR008983; Tumour_necrosis_fac-like.
Graphical view of domain structure.
Gene3D G3DSA:2.60.120.40; Tumour_necrosis_fac-like; 1.
Pfam PF00229; TNF; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF038013; TNF10_TNF11; 1.
ProDom PD002012; TNF_subf; 1.
[Domain structure / List of seq. sharing at least 1 domain]
SMART SM00207; TNF; 1.
SMART graphical view of domain structure.
PROSITE PS00251; TNF_1; FALSE_NEG.
PS50049; TNF_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS O35235.
Genome annotation databases
Ensembl ENSMUSG00000022015; Mus musculus. [Contig view]
Phylogenomic databases
HOGENOM O35235; -.
HOVERGEN O35235; -.
Other
SOURCE Tnfsf11; Mus musculus.
ProtoNet O35235.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Alternative splicing; Cell membrane; Cytokine; Cytoplasm; Developmental protein; Differentiation; Direct protein sequencing; Glycoprotein; Membrane; Receptor; Secreted; Signal-anchor; Transmembrane.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   316  316     Tumor necrosis factor ligand superfamily member 11, membrane form. PRO_0000034516
CHAIN   139   316  178     Tumor necrosis factor ligand superfamily member 11, soluble form. PRO_0000034517
TOPO_DOM   1    48  48     Cytoplasmic (Potential). 
TRANSMEM   49    69  21     Signal-anchor for type II membrane protein (Potential). 
TOPO_DOM   70   316  247     Extracellular (Potential). 
SITE   138   139  2     Cleavage. 
CARBOHYD   197   197        N-linked (GlcNAc...) (Potential). 
CARBOHYD   262   262        N-linked (GlcNAc...) (Potential). 
VAR_SEQ   1   117        Missing (in isoform 3). VSP_006448
VAR_SEQ   14    44        SSEEMGSGPGVPHEGPLHPAPSAPAPAPPPA -> TP (in isoform 2). VSP_006449
CONFLICT   99    99        G -> D (in Ref. 2; AAB86812). 
CONFLICT   141   143        Missing (in Ref. 5; BAA36970). 
STRAND   164   169  6      
STRAND   186   190  5      
STRAND   194   201  8      
STRAND   204   207  4      
STRAND   211   224  14      
HELIX   225   227  3      
STRAND   233   248  16      
STRAND   252   262  11      
STRAND   267   282  16      
STRAND   286   293  8      
HELIX   295   297  3      
TURN   302   304  3      
STRAND   305   313  9      
Sequence information
Length: 316 AA [This is the length of the unprocessed precursor] Molecular weight: 34945 Da [This is the MW of the unprocessed precursor] CRC64: 08DF63A2BE00967A [This is a checksum on the sequence]
        10         20         30         40         50         60 
MRRASRDYGK YLRSSEEMGS GPGVPHEGPL HPAPSAPAPA PPPAASRSMF LALLGLGLGQ 

        70         80         90        100        110        120 
VVCSIALFLY FRAQMDPNRI SEDSTHCFYR ILRLHENAGL QDSTLESEDT LPDSCRRMKQ 

       130        140        150        160        170        180 
AFQGAVQKEL QHIVGPQRFS GAPAMMEGSW LDVAQRGKPE AQPFAHLTIN AASIPSGSHK 

       190        200        210        220        230        240 
VTLSSWYHDR GWAKISNMTL SNGKLRVNQD GFYYLYANIC FRHHETSGSV PTDYLQLMVY 

       250        260        270        280        290        300 
VVKTSIKIPS SHNLMKGGST KNWSGNSEFH FYSINVGGFF KLRAGEEISI QVSNPSLLDP 

       310 
DQDATYFGAF KVQDID 

O35235 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
 Hosted by ch flag SIB Switzerland Mirror sites: Australia  Brazil  Canada  China  Korea
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!