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UniProtKB/Swiss-Prot entry O15537


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name XLRS1_HUMAN
Primary accession number O15537
Secondary accession numbers None
Integrated into Swiss-Prot on May 30, 2000
Sequence was last modified on August 1, 1998 (Sequence version 2)
Annotations were last modified on    June 16, 2009 (Entry version 85)
Name and origin of the protein
Protein name Retinoschisin [Precursor]
Synonym X-linked juvenile retinoschisis protein
Gene name
Name: RS1
Synonyms: XLRS1
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], AND VARIANTS XLRS1 ARG-96 AND TRP-102.
TISSUE=Retina;
DOI=10.1038/ng1097-164; PubMed=9326935 [NCBI, ExPASy, EBI, Israel, Japan]
Sauer C.G., Gehrig A., Warneke-Wittstock R., Marquardt A., Ewing C.C., Gibson A., Lorenz B., Jurklies B., Weber B.H.;
"Positional cloning of the gene associated with X-linked juvenile retinoschisis.";
Nat. Genet. 17:164-170(1997).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nature03440; PubMed=15772651 [NCBI, ExPASy, EBI, Israel, Japan]
Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C., Hurles M.E., Andrews T.D., Scott C.E., Searle S., Ramser J., Whittaker A., Deadman R., Carter N.P., Hunt S.E., Chen R., Cree A., Gunaratne P., Havlak P., Hodgson A., Metzker M.L., Richards S., Scott G., Steffen D., Sodergren E., Wheeler D.A., Worley K.C., Ainscough R., Ambrose K.D., Ansari-Lari M.A., Aradhya S., Ashwell R.I., Babbage A.K., Bagguley C.L., Ballabio A., Banerjee R., Barker G.E., Barlow K.F., Barrett I.P., Bates K.N., Beare D.M., Beasley H., Beasley O., Beck A., Bethel G., Blechschmidt K., Brady N., Bray-Allen S., Bridgeman A.M., Brown A.J., Brown M.J., Bonnin D., Bruford E.A., Buhay C., Burch P., Burford D., Burgess J., Burrill W., Burton J., Bye J.M., Carder C., Carrel L., Chako J., Chapman J.C., Chavez D., Chen E., Chen G., Chen Y., Chen Z., Chinault C., Ciccodicola A., Clark S.Y., Clarke G., Clee C.M., Clegg S., Clerc-Blankenburg K., Clifford K., Cobley V., Cole C.G., Conquer J.S., Corby N., Connor R.E., David R., Davies J., Davis C., Davis J., Delgado O., Deshazo D., Dhami P., Ding Y., Dinh H., Dodsworth S., Draper H., Dugan-Rocha S., Dunham A., Dunn M., Durbin K.J., Dutta I., Eades T., Ellwood M., Emery-Cohen A., Errington H., Evans K.L., Faulkner L., Francis F., Frankland J., Fraser A.E., Galgoczy P., Gilbert J., Gill R., Gloeckner G., Gregory S.G., Gribble S., Griffiths C., Grocock R., Gu Y., Gwilliam R., Hamilton C., Hart E.A., Hawes A., Heath P.D., Heitmann K., Hennig S., Hernandez J., Hinzmann B., Ho S., Hoffs M., Howden P.J., Huckle E.J., Hume J., Hunt P.J., Hunt A.R., Isherwood J., Jacob L., Johnson D., Jones S., de Jong P.J., Joseph S.S., Keenan S., Kelly S., Kershaw J.K., Khan Z., Kioschis P., Klages S., Knights A.J., Kosiura A., Kovar-Smith C., Laird G.K., Langford C., Lawlor S., Leversha M., Lewis L., Liu W., Lloyd C., Lloyd D.M., Loulseged H., Loveland J.E., Lovell J.D., Lozado R., Lu J., Lyne R., Ma J., Maheshwari M., Matthews L.H., McDowall J., McLaren S., McMurray A., Meidl P., Meitinger T., Milne S., Miner G., Mistry S.L., Morgan M., Morris S., Mueller I., Mullikin J.C., Nguyen N., Nordsiek G., Nyakatura G., O'dell C.N., Okwuonu G., Palmer S., Pandian R., Parker D., Parrish J., Pasternak S., Patel D., Pearce A.V., Pearson D.M., Pelan S.E., Perez L., Porter K.M., Ramsey Y., Reichwald K., Rhodes S., Ridler K.A., Schlessinger D., Schueler M.G., Sehra H.K., Shaw-Smith C., Shen H., Sheridan E.M., Shownkeen R., Skuce C.D., Smith M.L., Sotheran E.C., Steingruber H.E., Steward C.A., Storey R., Swann R.M., Swarbreck D., Tabor P.E., Taudien S., Taylor T., Teague B., Thomas K., Thorpe A., Timms K., Tracey A., Trevanion S., Tromans A.C., d'Urso M., Verduzco D., Villasana D., Waldron L., Wall M., Wang Q., Warren J., Warry G.L., Wei X., West A., Whitehead S.L., Whiteley M.N., Wilkinson J.E., Willey D.L., Williams G., Williams L., Williamson A., Williamson H., Wilming L., Woodmansey R.L., Wray P.W., Yen J., Zhang J., Zhou J., Zoghbi H., Zorilla S., Buck D., Reinhardt R., Poustka A., Rosenthal A., Lehrach H., Meindl A., Minx P.J., Hillier L.W., Willard H.F., Wilson R.K., Waterston R.H., Rice C.M., Vaudin M., Coulson A., Nelson D.L., Weinstock G., Sulston J.E., Durbin R.M., Hubbard T., Gibbs R.A., Beck S., Rogers J., Bentley D.R.;
"The DNA sequence of the human X chromosome.";
Nature 434:325-337(2005).
[3]
VARIANTS XLRS1 LYS-72 AND LEU-193.
DOI=10.1007/s004390050796; PubMed=9760195 [NCBI, ExPASy, EBI, Israel, Japan]
Hotta Y., Fujiki K., Hayakawa M., Ohta T., Fujimaki T., Tamaki K., Yokoyama T., Kanai A., Hirakata A., Hida T., Nishina S., Azuma N.;
"Japanese juvenile retinoschisis is caused by mutations of the XLRS1 gene.";
Hum. Genet. 103:142-144(1998).
[4]
VARIANT XLRS1 CYS-197.
DOI=10.1006/bbrc.1999.0323; PubMed=10079181 [NCBI, ExPASy, EBI, Israel, Japan]
Shastry B.S., Hejtmancik F.J., Trese M.T.;
"Recurrent missense (R197C) and nonsense (Y89X) mutations in the XLRS1 gene in families with X-linked retinoschisis.";
Biochem. Biophys. Res. Commun. 256:317-319(1999).
[5]
VARIANTS XLRS1 GLU-98; CYS-108; TRP-109; CYS-141; LYS-146; CYS-200 AND LYS-215.
DOI=10.1034/j.1399-0004.1999.550611.x; PubMed=10450864 [NCBI, ExPASy, EBI, Israel, Japan]
Gehrig A., White K., Lorenz B., Andrassi M., Clemens S., Weber B.H.;
"Assessment of RS1 in X-linked juvenile retinoschisis and sporadic senile retinoschisis.";
Clin. Genet. 55:461-465(1999).
[6]
VARIANTS XLRS1 LYS-72; VAL-74 AND ARG-109.
DOI=10.1038/sj.ejhg.5200300; PubMed=10234514 [NCBI, ExPASy, EBI, Israel, Japan]
Huopaniemi L., Rantala A., Forsius H., Somer M., de la Chapelle A., Alitalo T.;
"Three widespread founder mutations contribute to high incidence of X-linked juvenile retinoschisis in Finland.";
Eur. J. Hum. Genet. 7:368-376(1999).
[7]
VARIANT XLRS1 SER-193.
Duval P.-A., Marlhens F., Griffoin J.-M., Millet P., Arnaud B., Hamel C.P.;
"X-linked retinoschisis with a novel substitutive amino acid (P193S) in XLRS1.";
Hum. Mutat. 13:259-259(1999).
[8]
VARIANTS XLRS1 LYS-72; CYS-89; GLU-109; CYS-182 AND LEU-203.
DOI=10.1002/(SICI)1098-1004(1999)13:4<338::AID-HUMU16>3.0.CO;2-0; PubMed=10220153 [NCBI, ExPASy, EBI, Israel, Japan]
Mashima Y., Shinoda K., Ishida S., Ozawa Y., Kudoh J., Iwata T., Oguchi Y., Shimizu N.;
"Identification of four novel mutations of the XLRS1 gene in Japanese patients with X-linked juvenile retinoschisis.";
Hum. Mutat. 13:338-338(1999).
[9]
VARIANTS XLRS1 PRO-13; SER-70; ALA-70; LYS-72; VAL-74; ASN-85 DEL; ARG-96; GLN-102; ARG-140; TRP-142; CYS-163; SER-192; CYS-200; HIS-200 AND ARG-223.
DOI=10.1002/(SICI)1098-1004(199911)14:5<423::AID-HUMU8>3.0.CO;2-D; PubMed=10533068 [NCBI, ExPASy, EBI, Israel, Japan]
Hiriyanna K.T., Bingham E.L., Yashar B.M., Ayyagari R., Fishman G., Small K.W., Weinberg D.V., Weleber R.G., Lewis R.A., Andreasson S., Richards J.E., Sieving P.A.;
"Novel mutations in XLRS1 causing retinoschisis, including first evidence of putative leader sequence change.";
Hum. Mutat. 14:423-427(1999).
[10]
VARIANT XLRS1 GLN-102.
DOI=10.1002/ajmg.a.31568; PubMed=17304551 [NCBI, ExPASy, EBI, Israel, Japan]
Saldana M., Thompson J., Monk E., Trump D., Long V., Sheridan E.;
"X-linked retinoschisis in a female with a heterozygous RS1 missense mutation.";
Am. J. Med. Genet. A 143:608-609(2007).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF018963; AAC18405.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF018958; AAC18405.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF018959; AAC18405.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF018960; AAC18405.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF018961; AAC18405.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF018962; AAC18405.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF014459; AAC17928.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Z92542; CAI42483.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Z94056; CAI42483.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Z94056; CAI42776.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Z92542; CAI42776.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00007331; -.
RefSeq NP_000321.1; -.
UniGene Hs.584800
3D structure databases
HSSP P12259; 1CZT. [HSSP ENTRY / PDB]
ModBase O15537.
PTM databases
PhosphoSite O15537; -.
Organism-specific databases
GeneCards GC0XM018567; -.
H-InvDB HIX0056118; -.
HGNC HGNC:10457; RS1.
GenAtlas RS1.
MIM 312700; gene+phenotype. [NCBI / EBI]
Orphanet 792; Retinoschisis, X-linked.
PharmGKB PA134914102; -.
Gene expression databases
ArrayExpress O15537; -.
Bgee O15537; -.
CleanEx HS_RS1; -.
GermOnline ENSG00000102104; Homo sapiens.
Ontologies
GO
GO:0005615; Cellular component: extracellular space (traceable author statement from ProtInc).
GO:0005515; Molecular function: protein binding (inferred from electronic annotation from UniProtKB-KW).
GO:0007155; Biological process: cell adhesion (traceable author statement from ProtInc).
GO:0007275; Biological process: multicellular organismal development (traceable author statement from ProtInc).
GO:0050896; Biological process: response to stimulus (inferred from electronic annotation from UniProtKB-KW).
GO:0007601; Biological process: visual perception (traceable author statement from ProtInc).
QuickGo view.
Family and domain databases
InterPro IPR000421; Coagulation_factor_5/8-type_C.
Graphical view of domain structure.
Pfam PF00754; F5_F8_type_C; 1.
Pfam graphical view of domain structure.
SMART SM00231; FA58C; 1.
SMART graphical view of domain structure.
PROSITE PS01285; FA58C_1; 1.
PS01286; FA58C_2; FALSE_NEG.
PS50022; FA58C_3; 1.
PROSITE graphical view of domain structure (profiles).
Genome annotation databases
Ensembl ENSG00000102104; Homo sapiens. [Contig view]
GeneID 6247; -.
KEGG hsa:6247; -.
Phylogenomic databases
HOGENOM O15537; -.
HOVERGEN O15537; -.
OMA O15537; HKACKCD.
Other
NextBio 24257; -.
SOURCE RS1; Homo sapiens.
ProtoNet O15537.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Cell adhesion; Disease mutation; Disulfide bond; Polymorphism; Secreted; Sensory transduction; Signal; Vision.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    23  23     Potential. 
CHAIN   24   224  201     Retinoschisin. PRO_0000022695
DOMAIN   63   219  157     F5/8 type C. 
DISULFID   63   219        By similarity. 
VARIANT   12    12  1     L -> H (in XLRS1). VAR_008209 
VARIANT   13    13  1     L -> P (in XLRS1). VAR_008210 
VARIANT   59    59  1     C -> S (in XLRS1). VAR_008211 
VARIANT   65    65  1     Y -> C (in XLRS1). VAR_008212 
VARIANT   70    70  1     G -> A (in XLRS1). VAR_008213 
VARIANT   70    70  1     G -> S (in XLRS1). VAR_008214 
VARIANT   72    72  1     E -> D (in XLRS1). VAR_008180 
VARIANT   72    72  1     E -> K (in XLRS1). VAR_008181 
VARIANT   74    74  1     G -> V (in XLRS1). VAR_008182 
VARIANT   85    85  1     Missing (in XLRS1). VAR_023959
VARIANT   89    89  1     Y -> C (in XLRS1). VAR_008215 
VARIANT   96    96  1     W -> R (in XLRS1). VAR_008183 
VARIANT   98    98  1     A -> E (in XLRS1). VAR_008216 
VARIANT   102   102  1     R -> Q (in XLRS1). VAR_008217 
VARIANT   102   102  1     R -> W (in XLRS1). VAR_008184 
VARIANT   103   103  1     L -> R (in XLRS1). VAR_008218 
VARIANT   108   108  1     F -> C (in XLRS1). VAR_008219 
VARIANT   109   109  1     G -> E (in XLRS1). VAR_008220 
VARIANT   109   109  1     G -> R (in XLRS1). VAR_008185 
VARIANT   109   109  1     G -> W (in XLRS1). VAR_008221 
VARIANT   110   110  1     C -> Y (in XLRS1). VAR_008222 
VARIANT   112   112  1     W -> C (in XLRS1). VAR_008223 
VARIANT   113   113  1     L -> F (in XLRS1). VAR_008224 
VARIANT   127   127  1     L -> P (in XLRS1). VAR_008225 
VARIANT   135   135  1     G -> V (in XLRS1). VAR_008226 
VARIANT   136   136  1     I -> T (in XLRS1). VAR_008227 
VARIANT   138   138  1     T -> A (in XLRS1). VAR_008228 
VARIANT   140   140  1     G -> E (in XLRS1). VAR_008229 
VARIANT   140   140  1     G -> R (in XLRS1). VAR_008230 
VARIANT   141   141  1     R -> C (in XLRS1). VAR_008231 
VARIANT   141   141  1     R -> G (in XLRS1). VAR_008232 
VARIANT   141   141  1     R -> H (in XLRS1). VAR_008233 
VARIANT   142   142  1     C -> W (in XLRS1). VAR_008234 
VARIANT   143   143  1     D -> V (in XLRS1). VAR_008235 
VARIANT   146   146  1     E -> D (in XLRS1). VAR_008236 
VARIANT   146   146  1     E -> K (in XLRS1). VAR_008237 
VARIANT   155   155  1     Y -> C (in XLRS1). VAR_008238 
VARIANT   158   158  1     D -> N (in dbSNP:rs1800002 [NCBI]). VAR_008239 
VARIANT   163   163  1     W -> C (in XLRS1). VAR_008240 
VARIANT   178   178  1     G -> D (in XLRS1). VAR_008241 
VARIANT   182   182  1     R -> C (in XLRS1). VAR_008242 
VARIANT   192   192  1     P -> R (in XLRS1). VAR_008243 
VARIANT   192   192  1     P -> S (in XLRS1). VAR_008244 
VARIANT   193   193  1     P -> L (in XLRS1). VAR_008245 
VARIANT   193   193  1     P -> S (in XLRS1). VAR_008246 
VARIANT   197   197  1     R -> C (in XLRS1). VAR_008247 
VARIANT   197   197  1     R -> H (in XLRS1). VAR_008248 
VARIANT   199   199  1     I -> T (in XLRS1). VAR_008249 
VARIANT   200   200  1     R -> C (in XLRS1). VAR_008251 
VARIANT   200   200  1     R -> H (in XLRS1). VAR_008252 
VARIANT   203   203  1     P -> L (in XLRS1). VAR_008253 
VARIANT   207   207  1     H -> Q (in XLRS1). VAR_008254 
VARIANT   209   209  1     R -> H (in XLRS1). VAR_008255 
VARIANT   213   213  1     R -> W (in XLRS1). VAR_008256 
VARIANT   215   215  1     E -> K (in XLRS1). VAR_008257 
VARIANT   215   215  1     E -> Q (in XLRS1). VAR_008258 
VARIANT   216   216  1     L -> P (in XLRS1). VAR_008259 
VARIANT   219   219  1     C -> G (in XLRS1). VAR_008260 
VARIANT   219   219  1     C -> R (in XLRS1). VAR_008261 
VARIANT   222   222  1     K -> N (in dbSNP:rs1800004 [NCBI]). VAR_012078 
VARIANT   223   223  1     C -> R (in XLRS1). VAR_008262 
Sequence information
Length: 224 AA [This is the length of the unprocessed precursor] Molecular weight: 25592 Da [This is the MW of the unprocessed precursor] CRC64: A3893895E6A7E292 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MSRKIEGFLL LLLFGYEATL GLSSTEDEGE DPWYQKACKC DCQGGPNALW SAGATSLDCI 

        70         80         90        100        110        120 
PECPYHKPLG FESGEVTPDQ ITCSNPEQYV GWYSSWTANK ARLNSQGFGC AWLSKFQDSS 

       130        140        150        160        170        180 
QWLQIDLKEI KVISGILTQG RCDIDEWMTK YSVQYRTDER LNWIYYKDQT GNNRVFYGNS 

       190        200        210        220 
DRTSTVQNLL RPPIISRFIR LIPLGWHVRI AIRMELLECV SKCA 

O15537 in FASTA format

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