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UniProtKB/Swiss-Prot entry O15499


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name GSC2_HUMAN
Primary accession number O15499
Secondary accession numbers None
Integrated into Swiss-Prot on May 30, 2000
Sequence was last modified on January 1, 1998 (Sequence version 1)
Annotations were last modified on    June 16, 2009 (Entry version 72)
Name and origin of the protein
Protein name Homeobox protein goosecoid-2
Synonyms GSC-2
Homeobox protein goosecoid-like
Gene name
Name: GSC2
Synonyms: GSCL
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANT CYS-47.
DOI=10.1006/geno.1997.5046; PubMed=9441739 [NCBI, ExPASy, EBI, Israel, Japan]
Funke B., St Jore B., Puech A., Sirotkin H., Edelmann L., Carlson C., Raft S., Pandita R.K., Kucherlapati R., Skoultchi A., Morrow B.E.;
"Characterization and mutation analysis of goosecoid-like (GSCL), a homeodomain-containing gene that maps to the critical region for VCFS/DGS on 22q11.";
Genomics 46:364-372(1997).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=9150167 [NCBI, ExPASy, EBI, Israel, Japan]
Gottlieb S., Emanuel B.S., Driscoll D.A., Sellinger B., Wang Z., Roe B., Budarf M.L.;
"The DiGeorge syndrome minimal critical region contains a goosecoid-like (GSCL) homeobox gene that is expressed early in human development.";
Am. J. Hum. Genet. 60:1194-1201(1997).
Comments
  • FUNCTION: May have a role in development. May regulate its own transcription. May bind the bicoid consensus sequence TAATCC.
  • SUBCELLULAR LOCATION: Nucleus (By similarity).
  • TISSUE SPECIFICITY: Detected in adult testis and pituitary, and in 9-10 week fetal tissue (thorax). Probably expressed in other tissues at low levels.
  • DEVELOPMENTAL STAGE: Expressed in early human development as well as in a limited number of adult tissues.
  • DISEASE: May play a part in the etiology of the velocardiofacial/DiGeorge syndrome (VCFS/DGS), a developmental disorder characterized by structural and functional palate anomalies, conotruncal cardiac malformations, immunodeficiency, hypocalcemia, and typical facial anomalies. Most cases result from a deletion of chromosome 22q11.2 (the DiGeorge syndrome chromosome region, or DGCR).
  • SIMILARITY: Belongs to the paired homeobox family. Bicoid subfamily.
  • SIMILARITY: Contains 1 homeobox DNA-binding domain.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
U96402; AAC39544.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00006760; -.
RefSeq NP_005306.1; -.
UniGene Hs.517407
3D structure databases
HSSP P06601; 1FJL. [HSSP ENTRY / PDB]
ModBase O15499.
Organism-specific databases
GeneCards GC22M017516; -.
H-InvDB HIX0041202; -.
HGNC HGNC:4613; GSC2.
GenAtlas GSC2.
MIM 601845; gene. [NCBI / EBI]
PharmGKB PA29005; -.
Gene expression databases
ArrayExpress O15499; -.
CleanEx HS_GSC2; -.
GermOnline ENSG00000063515; Homo sapiens.
Ontologies
GO
GO:0005634; Cellular component: nucleus (inferred from electronic annotation from UniProtKB-SubCell).
GO:0043565; Molecular function: sequence-specific DNA binding (inferred from electronic annotation from InterPro).
GO:0003700; Molecular function: transcription factor activity (inferred from direct assay from MGI).
GO:0009653; Biological process: anatomical structure morphogenesis (traceable author statement from ProtInc).
GO:0006357; Biological process: regulation of transcription from RNA polymerase II promoter (inferred from direct assay from MGI).
QuickGo view.
Family and domain databases
InterPro IPR001356; Homeobox.
IPR017970; Homeobox_CS.
IPR012287; Homeodomain-rel.
Graphical view of domain structure.
Gene3D G3DSA:1.10.10.60; Homeodomain-rel; 1.
Pfam PF00046; Homeobox; 1.
Pfam graphical view of domain structure.
ProDom PD000010; Homeobox; 1.
[Domain structure / List of seq. sharing at least 1 domain]
SMART SM00389; HOX; 1.
SMART graphical view of domain structure.
PROSITE PS00027; HOMEOBOX_1; 1.
PS50071; HOMEOBOX_2; 1.
PROSITE graphical view of domain structure (profiles).
Proteomic databases
PRIDE O15499; -.
Genome annotation databases
Ensembl ENSG00000063515; Homo sapiens. [Contig view]
GeneID 2928; -.
KEGG hsa:2928; -.
Phylogenomic databases
HOGENOM O15499; -.
HOVERGEN O15499; -.
OMA O15499; CPFSIEH.
Other
NextBio 11607; -.
SOURCE GSC2; Homo sapiens.
ProtoNet O15499.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
DNA-binding; Homeobox; Nucleus; Polymorphism.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   205  205     Homeobox protein goosecoid-2. PRO_0000048891
DNA_BIND   126   185  60     Homeobox. 
COMPBIAS   2     5  4     Poly-Ala. 
COMPBIAS   64    70  7     Poly-Cys. 
VARIANT   47    47  1     R -> C. VAR_008549 
Sequence information
Length: 205 AA [This is the length of the unprocessed precursor] Molecular weight: 21545 Da [This is the MW of the unprocessed precursor] CRC64: 665C33D9C454E7A7 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MAAAAGGAAS RRGAGRPCPF SIEHILSSLP ERSLPARAAC PPQPAGRQSP AKPEEPGAPE 

        70         80         90        100        110        120 
AAPCACCCCC GPRAAPCGPP EAAAGLGARL AWPLRLGPAV PLSLGAPAGG SGALPGAVGP 

       130        140        150        160        170        180 
GSQRRTRRHR TIFSEEQLQA LEALFVQNQY PDVSTRERLA GRIRLREERV EVWFKNRRAK 

       190        200 
WRHQKRASAS ARLLPGVKKS PKGSC 

O15499 in FASTA format

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