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UniProtKB/Swiss-Prot entry O15266


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name SHOX_HUMAN
Primary accession number O15266
Secondary accession numbers O00412 O00413 O15267
Integrated into Swiss-Prot on May 30, 2000
Sequence was last modified on January 1, 1998 (Sequence version 1)
Annotations were last modified on    June 16, 2009 (Entry version 93)
Name and origin of the protein
Protein name Short stature homeobox protein
Synonyms Short stature homeobox-containing protein
Pseudoautosomal homeobox-containing osteogenic protein
Gene name
Name: SHOX
Synonyms: PHOG
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORMS SHOXA AND SHOXB), AND INVOLVEMENT IN IDIOPATHIC SHORT STATURE.
TISSUE=Skeletal muscle;
DOI=10.1038/ng0597-54; PubMed=9140395 [NCBI, ExPASy, EBI, Israel, Japan]
Rao E., Weiss B., Fukami M., Rump A., Niesler B., Mertz A., Muroya K., Binder G., Kirsch S., Winkelmann M., Nordsiek G., Heinrich U., Breuning M.H., Ranke M.B., Rosenthal A., Ogata T., Rappold G.A.;
"Pseudoautosomal deletions encompassing a novel homeobox gene cause growth failure in idiopathic short stature and Turner syndrome.";
Nat. Genet. 16:54-63(1997).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM SHOXA).
DOI=10.1093/hmg/6.8.1341; PubMed=9259282 [NCBI, ExPASy, EBI, Israel, Japan]
Ellison J.W., Wardak Z., Young M.F., Gehron Robey P., Laig-Webster M., Chiong W.;
"PHOG, a candidate gene for involvement in the short stature of Turner syndrome.";
Hum. Mol. Genet. 6:1341-1347(1997).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nature03440; PubMed=15772651 [NCBI, ExPASy, EBI, Israel, Japan]
Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C., Hurles M.E., Andrews T.D., Scott C.E., Searle S., Ramser J., Whittaker A., Deadman R., Carter N.P., Hunt S.E., Chen R., Cree A., Gunaratne P., Havlak P., Hodgson A., Metzker M.L., Richards S., Scott G., Steffen D., Sodergren E., Wheeler D.A., Worley K.C., Ainscough R., Ambrose K.D., Ansari-Lari M.A., Aradhya S., Ashwell R.I., Babbage A.K., Bagguley C.L., Ballabio A., Banerjee R., Barker G.E., Barlow K.F., Barrett I.P., Bates K.N., Beare D.M., Beasley H., Beasley O., Beck A., Bethel G., Blechschmidt K., Brady N., Bray-Allen S., Bridgeman A.M., Brown A.J., Brown M.J., Bonnin D., Bruford E.A., Buhay C., Burch P., Burford D., Burgess J., Burrill W., Burton J., Bye J.M., Carder C., Carrel L., Chako J., Chapman J.C., Chavez D., Chen E., Chen G., Chen Y., Chen Z., Chinault C., Ciccodicola A., Clark S.Y., Clarke G., Clee C.M., Clegg S., Clerc-Blankenburg K., Clifford K., Cobley V., Cole C.G., Conquer J.S., Corby N., Connor R.E., David R., Davies J., Davis C., Davis J., Delgado O., Deshazo D., Dhami P., Ding Y., Dinh H., Dodsworth S., Draper H., Dugan-Rocha S., Dunham A., Dunn M., Durbin K.J., Dutta I., Eades T., Ellwood M., Emery-Cohen A., Errington H., Evans K.L., Faulkner L., Francis F., Frankland J., Fraser A.E., Galgoczy P., Gilbert J., Gill R., Gloeckner G., Gregory S.G., Gribble S., Griffiths C., Grocock R., Gu Y., Gwilliam R., Hamilton C., Hart E.A., Hawes A., Heath P.D., Heitmann K., Hennig S., Hernandez J., Hinzmann B., Ho S., Hoffs M., Howden P.J., Huckle E.J., Hume J., Hunt P.J., Hunt A.R., Isherwood J., Jacob L., Johnson D., Jones S., de Jong P.J., Joseph S.S., Keenan S., Kelly S., Kershaw J.K., Khan Z., Kioschis P., Klages S., Knights A.J., Kosiura A., Kovar-Smith C., Laird G.K., Langford C., Lawlor S., Leversha M., Lewis L., Liu W., Lloyd C., Lloyd D.M., Loulseged H., Loveland J.E., Lovell J.D., Lozado R., Lu J., Lyne R., Ma J., Maheshwari M., Matthews L.H., McDowall J., McLaren S., McMurray A., Meidl P., Meitinger T., Milne S., Miner G., Mistry S.L., Morgan M., Morris S., Mueller I., Mullikin J.C., Nguyen N., Nordsiek G., Nyakatura G., O'dell C.N., Okwuonu G., Palmer S., Pandian R., Parker D., Parrish J., Pasternak S., Patel D., Pearce A.V., Pearson D.M., Pelan S.E., Perez L., Porter K.M., Ramsey Y., Reichwald K., Rhodes S., Ridler K.A., Schlessinger D., Schueler M.G., Sehra H.K., Shaw-Smith C., Shen H., Sheridan E.M., Shownkeen R., Skuce C.D., Smith M.L., Sotheran E.C., Steingruber H.E., Steward C.A., Storey R., Swann R.M., Swarbreck D., Tabor P.E., Taudien S., Taylor T., Teague B., Thomas K., Thorpe A., Timms K., Tracey A., Trevanion S., Tromans A.C., d'Urso M., Verduzco D., Villasana D., Waldron L., Wall M., Wang Q., Warren J., Warry G.L., Wei X., West A., Whitehead S.L., Whiteley M.N., Wilkinson J.E., Willey D.L., Williams G., Williams L., Williamson A., Williamson H., Wilming L., Woodmansey R.L., Wray P.W., Yen J., Zhang J., Zhou J., Zoghbi H., Zorilla S., Buck D., Reinhardt R., Poustka A., Rosenthal A., Lehrach H., Meindl A., Minx P.J., Hillier L.W., Willard H.F., Wilson R.K., Waterston R.H., Rice C.M., Vaudin M., Coulson A., Nelson D.L., Weinstock G., Sulston J.E., Durbin R.M., Hubbard T., Gibbs R.A., Beck S., Rogers J., Bentley D.R.;
"The DNA sequence of the human X chromosome.";
Nature 434:325-337(2005).
[4]
VARIANTS LWD VAL-132 AND LEU-153.
DOI=10.1007/s004390000352; PubMed=11030412 [NCBI, ExPASy, EBI, Israel, Japan]
Grigelioniene G., Ekloef O., Ivarsson S.A., Westphal O., Neumeyer L., Kedra D., Dumanski J., Hagenaes L.;
"Mutations in short stature homeobox containing gene (SHOX) in dyschondrosteosis but not in hypochondroplasia.";
Hum. Genet. 107:145-149(2000).
[5]
DISEASE.
DOI=10.1002/ajmg.10228; PubMed=11891678 [NCBI, ExPASy, EBI, Israel, Japan]
Cormier-Daire V., Huber C., Munnich A.;
"Allelic and nonallelic heterogeneity in dyschondrosteosis (Leri-Weill syndrome).";
Am. J. Med. Genet. 106:272-274(2001).
[6]
VARIANT LWD CYS-173.
DOI=10.1136/jmg.38.5.323; PubMed=11403039 [NCBI, ExPASy, EBI, Israel, Japan]
Huber C., Cusin V., Le Merrer M., Mathieu M., Sulmont V., Dagoneau N., Munnich A., Cormier-Daire V.;
"SHOX point mutations in dyschondrosteosis.";
J. Med. Genet. 38:323-323(2001).
[7]
VARIANT LMD TRP-168.
DOI=10.1210/jc.87.3.1390; PubMed=11889214 [NCBI, ExPASy, EBI, Israel, Japan]
Ogata T., Muroya K., Sasaki G., Nishimura G., Kitoh H., Hattori T.;
"SHOX nullizygosity and haploinsufficiency in a Japanese family: implication for the development of Turner skeletal features.";
J. Clin. Endocrinol. Metab. 87:1390-1394(2002).
Comments
  • FUNCTION: Controls fundamental aspects of growth and development.
  • SUBCELLULAR LOCATION: Nucleus (By similarity).
  • ALTERNATIVE PRODUCTS: 2 named isoforms [FASTA] produced by alternative splicing.
    NameSHOXA
    Isoform IDO15266-1
    This is the isoform sequence displayed in this entry.
    NameSHOXB
    Isoform IDO15266-2
    Features which should be applied to build the isoform sequence: VSP_002287.
  • TISSUE SPECIFICITY: SHOXA is expressed in skeletal muscle, placenta, pancreas, heart and bone marrow fibroblast and SHOXB is highly expressed in bone marrow fibroblast followed by kidney and skeletal muscle. SHOXB is not expressed in brain, kidney, liver and lung. Highly expressed in osteogenic cells.
  • INDUCTION: By retinoic acid and phorbol-12-myristate 13-acetate 13-acetate (PMA).
  • DISEASE: Defects in SHOX are the cause of Leri-Weill dyschondrosteosis (LWD) [MIM:127300]. LWD is a dominantly inherited skeletal dysplasia characterized by moderate short stature predominantly because of short mesomelic limb segments. It is often associated with the Madelung deformity of the wrist, comprising bowing of the radius and dorsal dislocation of the distal ulna.
  • DISEASE: Defects in SHOX are a cause of Langer mesomelic dysplasia (LMD) [MIM:249700]. LMD is an autosomal recessive rare skeletal dysplasia characterized by severe short stature owing to shortening and maldevelopment of the mesomelic and rhizomelic segments of the limbs. Associated malformations are rarely reported and intellect is normal in all affected subjects reported to date.
  • DISEASE: Defects in SHOX are a cause of idiopathic short stature [MIM:300582]. Idiopathic short stature is usually defined as a height below the third percentile for chronological age or minus 2 standard deviations of national height standards in the absence of specific causative disorders.
  • MISCELLANEOUS: The gene encoding for this protein is located in the pseudoautosomal region 1 (PAR1) of X and Y chromosomes.
  • SIMILARITY: Belongs to the paired homeobox family. Bicoid subfamily.
  • SIMILARITY: Contains 1 homeobox DNA-binding domain.
  • SIMILARITY: Contains 1 OAR domain.
  • WEB RESOURCE: Name=GeneReviews; URL="http://www.genetests.org/query?gene=SHOX";.
  • WEB RESOURCE: Name=GeneReviews; URL="http://www.genetests.org/query?gene=SHOXY";.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
Y11536; CAA72299.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Y11535; CAA72298.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
U82668; -; NOT_ANNOTATED_CDS; Genomic_DNA.[EMBL / GenBank / DDBJ]
U89331; AAC18820.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BX004827; -; NOT_ANNOTATED_CDS; Genomic_DNA.[EMBL / GenBank / DDBJ]
IPI IPI00005744; -.
IPI00411417; -.
RefSeq NP_000442.1; -.
UniGene Hs.105932
3D structure databases
HSSP P06601; 1FJL. [HSSP ENTRY / PDB]
ModBase O15266.
PTM databases
PhosphoSite O15266; -.
Organism-specific databases
GeneCards GC0XP000527; -.
H-InvDB HIX0056296; -.
HGNC HGNC:10853; SHOX.
GenAtlas SHOX.
MIM 127300; phenotype. [NCBI / EBI]
249700; phenotype. [NCBI / EBI]
300582; phenotype. [NCBI / EBI]
312865; gene. [NCBI / EBI]
400020; gene. [NCBI / EBI]
Orphanet 240; Dyschondrosteosis.
2632; Mesomelic dwarfism, Langer type.
137693; Short stature, idiopathic.
PharmGKB PA134978644; -.
Gene expression databases
ArrayExpress O15266; -.
Bgee O15266; -.
CleanEx HS_SHOX; -.
Ontologies
GO
GO:0005634; Cellular component: nucleus (inferred from electronic annotation from UniProtKB-SubCell).
GO:0043565; Molecular function: sequence-specific DNA binding (inferred from electronic annotation from InterPro).
GO:0003700; Molecular function: transcription factor activity (traceable author statement from ProtInc).
GO:0006355; Biological process: regulation of transcription, DNA-dependent (inferred from electronic annotation from UniProtKB-KW).
GO:0001501; Biological process: skeletal system development (traceable author statement from ProtInc).
GO:0006366; Biological process: transcription from RNA polymerase II promoter (traceable author statement from ProtInc).
QuickGo view.
Family and domain databases
InterPro IPR003654; Homeo_OAR.
IPR001356; Homeobox.
IPR017970; Homeobox_CS.
IPR012287; Homeodomain-rel.
IPR000047; HTH_lambrepressr.
Graphical view of domain structure.
Gene3D G3DSA:1.10.10.60; Homeodomain-rel; 1.
Pfam PF00046; Homeobox; 1.
PF03826; OAR; 1.
Pfam graphical view of domain structure.
PRINTS PR00031; HTHREPRESSR.
ProDom PD000010; Homeobox; 1.
[Domain structure / List of seq. sharing at least 1 domain]
SMART SM00389; HOX; 1.
SMART graphical view of domain structure.
PROSITE PS00027; HOMEOBOX_1; 1.
PS50071; HOMEOBOX_2; 1.
PS50803; OAR; 1.
PROSITE graphical view of domain structure (profiles).
Proteomic databases
PRIDE O15266; -.
Genome annotation databases
Ensembl ENSG00000185960; Homo sapiens. [Contig view]
GeneID 6473; -.
KEGG hsa:6473; -.
Phylogenomic databases
HOGENOM O15266; -.
HOVERGEN O15266; -.
OMA O15266; SKESITY.
Other
NextBio 25145; -.
SOURCE SHOX; Homo sapiens.
ProtoNet O15266.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Activator; Alternative splicing; Developmental protein; Disease mutation; DNA-binding; Dwarfism; Homeobox; Nucleus; Transcription; Transcription regulation.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   292  292     Short stature homeobox protein. PRO_0000049291
DNA_BIND   117   176  60     Homeobox. 
MOTIF   242   249  8     SH3-binding (Potential). 
MOTIF   274   287  14     OAR. 
COMPBIAS   19    28  10     Poly-Gly. 
COMPBIAS   242   245  4     Poly-Pro. 
COMPBIAS   264   267  4     Poly-Ala. 
VAR_SEQ   212   292        VQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIA SLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHA EALGL -> MEFCSCRPGWSIMA (in isoform SHOXB). VSP_002287
VARIANT   132   132  1     L -> V (in LWD). VAR_019414 
VARIANT   153   153  1     R -> L (in LWD). VAR_019415 
VARIANT   168   168  1     R -> W (in LMD). VAR_019416 
VARIANT   173   173  1     R -> C (in LWD). VAR_012346 
Sequence information
Length: 292 AA [This is the length of the unprocessed precursor] Molecular weight: 32236 Da [This is the MW of the unprocessed precursor] CRC64: 0F2A61A3051CB360 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MEELTAFVSK SFDQKSKDGN GGGGGGGGKK DSITYREVLE SGLARSRELG TSDSSLQDIT 

        70         80         90        100        110        120 
EGGGHCPVHL FKDHVDNDKE KLKEFGTARV AEGIYECKEK REDVKSEDED GQTKLKQRRS 

       130        140        150        160        170        180 
RTNFTLEQLN ELERLFDETH YPDAFMREEL SQRLGLSEAR VQVWFQNRRA KCRKQENQMH 

       190        200        210        220        230        240 
KGVILGTANH LDACRVAPYV NMGALRMPFQ QVQAQLQLEG VAHAHPHLHP HLAAHAPYLM 

       250        260        270        280        290 
FPPPPFGLPI ASLAESASAA AVVAAAAKSN SKNSSIADLR LKARKHAEAL GL 

O15266 in FASTA format

View entry in raw text format (no links)
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