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UniProtKB/Swiss-Prot entry O14788


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name TNF11_HUMAN
Primary accession number O14788
Secondary accession numbers O14723 Q96Q17 Q9P2Q3
Integrated into Swiss-Prot on January 24, 2001
Sequence was last modified on January 1, 1998 (Sequence version 1)
Annotations were last modified on    June 16, 2009 (Entry version 89)
Name and origin of the protein
Protein name Tumor necrosis factor ligand superfamily member 11
Synonyms Receptor activator of nuclear factor kappa B ligand
RANKL
TNF-related activation-induced cytokine
TRANCE
Osteoprotegerin ligand
OPGL
Osteoclast differentiation factor
ODF
CD254 antigen
Contains Tumor necrosis factor ligand superfamily member 11, membrane form
Tumor necrosis factor ligand superfamily member 11, soluble form
Gene name
Name: TNFSF11
Synonyms: OPGL, RANKL, TRANCE
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
TISSUE=Bone marrow, and Peripheral blood;
DOI=10.1038/36593; PubMed=9367155 [NCBI, ExPASy, EBI, Israel, Japan]
Anderson D.M., Maraskovsky E., Billingsley W.L., Dougall W.C., Tometsko M.E., Roux E.R., Teepe M.C., DuBose R.F., Cosman D., Galibert L.;
"A homologue of the TNF receptor and its ligand enhance T-cell growth and dendritic-cell function.";
Nature 390:175-179(1997).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
TISSUE=Lymph node;
DOI=10.1016/S0092-8674(00)81569-X; PubMed=9568710 [NCBI, ExPASy, EBI, Israel, Japan]
Lacey D.L., Timms E., Tan H.-L., Kelley M.J., Dunstan C.R., Burgess T., Elliott R., Colombero A., Elliott G., Scully S., Hsu H., Sullivan J., Hawkins N., Davy E., Capparelli C., Eli A., Qian Y.-X., Kaufman S., Sarosi I., Shalhoub V., Senaldi G., Guo J., Delaney J., Boyle W.J.;
"Osteoprotegerin ligand is a cytokine that regulates osteoclast differentiation and activation.";
Cell 93:165-176(1998).
[3]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2 AND 3).
Ikeda T., Kuroyama H., Hirokawa K.;
"Determination of human RANKL isoforms.";
Submitted (JUN-2001) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
TISSUE=Tongue;
DOI=10.1006/bbrc.2000.2314; PubMed=10708588 [NCBI, ExPASy, EBI, Israel, Japan]
Nagai M., Kyakumoto S., Sato N.;
"Cancer cells responsible for humoral hypercalcemia express mRNA encoding a secreted form of ODF/TRANCE that induces osteoclast formation.";
Biochem. Biophys. Res. Commun. 269:532-536(2000).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
TISSUE=Lung;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[6]
NUCLEOTIDE SEQUENCE [MRNA] OF 73-317.
TISSUE=Thymocyte;
DOI=10.1074/jbc.272.40.25190; PubMed=9312132 [NCBI, ExPASy, EBI, Israel, Japan]
Wong B.R., Rho J., Arron J., Robinson E., Orlinick J., Chao M., Kalachikov S., Cayani E., Bartlett F.S. III, Frankel W.N., Lee S.Y., Choi Y.;
"TRANCE is a novel ligand of the tumor necrosis factor receptor family that activates c-Jun N-terminal kinase in T cells.";
J. Biol. Chem. 272:25190-25194(1997).
[7]
VARIANT OPTB2 LYS-199.
DOI=10.1038/ng2076; PubMed=17632511 [NCBI, ExPASy, EBI, Israel, Japan]
Sobacchi C., Frattini A., Guerrini M.M., Abinun M., Pangrazio A., Susani L., Bredius R., Mancini G., Cant A., Bishop N., Grabowski P., Del Fattore A., Messina C., Errigo G., Coxon F.P., Scott D.I., Teti A., Rogers M.J., Vezzoni P., Villa A., Helfrich M.H.;
"Osteoclast-poor human osteopetrosis due to mutations in the gene encoding RANKL.";
Nat. Genet. 39:960-962(2007).
Comments
  • FUNCTION: Cytokine that binds to TNFRSF11B/OPG and to TNFRSF11A/RANK. Osteoclast differentiation and activation factor. Augments the ability of dendritic cells to stimulate naive T-cell proliferation. May be an important regulator of interactions between T-cells and dendritic cells and may play a role in the regulation of the T-cell-dependent immune response. May also play an important role in enhanced bone-resorption in humoral hypercalcemia of malignancy.
  • SUBUNIT: Homotrimer (By similarity).
  • SUBCELLULAR LOCATION: Isoform 1: Cell membrane; Single-pass type II membrane protein.
  • SUBCELLULAR LOCATION: Isoform 3: Cell membrane; Single-pass type II membrane protein.
  • SUBCELLULAR LOCATION: Isoform 2: Cytoplasm (By similarity).
  • SUBCELLULAR LOCATION: Tumor necrosis factor ligand superfamily member 11, soluble form: Secreted (By similarity).
  • ALTERNATIVE PRODUCTS: 3 named isoforms [FASTA] produced by alternative splicing.
    Name1
    Isoform IDO14788-1
    This is the isoform sequence displayed in this entry.
    Name2
    SynonymsSODF
    Isoform IDO14788-2
    Features which should be applied to build the isoform sequence: VSP_006447.
    Name3
    Isoform IDO14788-3
    Features which should be applied to build the isoform sequence: VSP_006446.
  • TISSUE SPECIFICITY: Highest in the peripheral lymph nodes, weak in spleen, peripheral blood Leukocytes, bone marrow, heart, placenta, skeletal muscle, stomach and thyroid.
  • INDUCTION: Up-regulated by T-cell receptor stimulation.
  • PTM: The soluble form of isoform 1 derives from the membrane form by proteolytic processing (By similarity). The cleavage may be catalyzed by ADAM17.
  • DISEASE: Defects in TNFSF11 are the cause of osteopetrosis autosomal recessive type 2 (OPTB2) [MIM:259710]; also known as osteoclast-poor osteopetrosis. Osteopetrosis is a rare genetic disease characterized by abnormally dense bone, due to defective resorption of immature bone. The disorder occurs in two forms: a severe autosomal recessive form occurring in utero, infancy, or childhood, and a benign autosomal dominant form occurring in adolescence or adulthood. Autosomal recessive osteopetrosis is usually associated with normal or elevated amount of non-functional osteoclasts. OPTB2 is characterized by paucity of osteoclasts, suggesting a molecular defect in osteoclast development.
  • SIMILARITY: Belongs to the tumor necrosis factor family.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF019047; AAB86811.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF053712; AAC39731.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB064269; BAB79694.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB061227; BAB71768.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB064270; BAB79695.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB037599; BAA90488.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC074823; AAH74823.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC074890; AAH74890.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF013171; AAC51762.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00023732; -.
IPI00219810; -.
IPI00219811; -.
RefSeq NP_003692.1; -.
UniGene Hs.333791
3D structure databases
HSSP O35235; 1JTZ. [HSSP ENTRY / PDB]
SMR O14788; 162-317.
ModBase O14788.
Enzyme and pathway databases
Pathway_Interaction_DB il6_7pathway; IL6-mediated signaling events.
Organism-specific databases
GeneCards GC13P042034; -.
H-InvDB HIX0037293; -.
HGNC HGNC:11926; TNFSF11.
GenAtlas TNFSF11.
HPA CAB009193; -.
MIM 259710; phenotype. [NCBI / EBI]
602642; gene. [NCBI / EBI]
Orphanet 2781; Osteopetrosis.
PharmGKB PA36619; -.
Gene expression databases
ArrayExpress O14788; -.
Bgee O14788; -.
CleanEx HS_TNFSF11; -.
GermOnline ENSG00000120659; Homo sapiens.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from UniProtKB-SubCell).
GO:0005615; Cellular component: extracellular space (inferred from electronic annotation from UniProtKB-KW).
GO:0005887; Cellular component: integral to plasma membrane (non-traceable author statement from UniProtKB).
GO:0005125; Molecular function: cytokine activity (non-traceable author statement from UniProtKB).
GO:0004872; Molecular function: receptor activity (inferred from electronic annotation from UniProtKB-KW).
GO:0005164; Molecular function: tumor necrosis factor receptor binding (non-traceable author statement from UniProtKB).
GO:0006955; Biological process: immune response (non-traceable author statement from UniProtKB).
GO:0030316; Biological process: osteoclast differentiation (non-traceable author statement from UniProtKB).
GO:0045780; Biological process: positive regulation of bone resorption (inferred from direct assay from UniProtKB).
GO:0045672; Biological process: positive regulation of osteoclast differentiation (inferred from direct assay from UniProtKB).
QuickGo view.
Family and domain databases
InterPro IPR017355; TNF10_TNF11.
IPR006052; TNF_family.
IPR008983; Tumour_necrosis_fac-like.
Graphical view of domain structure.
Gene3D G3DSA:2.60.120.40; Tumour_necrosis_fac-like; 1.
Pfam PF00229; TNF; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF038013; TNF10_TNF11; 1.
ProDom PD002012; TNF_subf; 1.
[Domain structure / List of seq. sharing at least 1 domain]
SMART SM00207; TNF; 1.
SMART graphical view of domain structure.
PROSITE PS00251; TNF_1; FALSE_NEG.
PS50049; TNF_2; 1.
PROSITE graphical view of domain structure (profiles).
Proteomic databases
PRIDE O14788; -.
Genome annotation databases
Ensembl ENSG00000120659; Homo sapiens. [Contig view]
GeneID 8600; -.
KEGG hsa:8600; -.
Phylogenomic databases
HOGENOM O14788; -.
HOVERGEN O14788; -.
OMA O14788; QHIRAEK.
Other
NextBio 32221; -.
PMAP-CutDB O14788; -.
SOURCE TNFSF11; Homo sapiens.
ProtoNet O14788.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Alternative splicing; Cell membrane; Cytokine; Cytoplasm; Developmental protein; Differentiation; Disease mutation; Glycoprotein; Membrane; Osteopetrosis; Receptor; Secreted; Signal-anchor; Transmembrane.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   317  317     Tumor necrosis factor ligand superfamily member 11, membrane form. PRO_0000034514
CHAIN   140   317  178     Tumor necrosis factor ligand superfamily member 11, soluble form (By similarity). PRO_0000034515
TOPO_DOM   1    47  47     Cytoplasmic (Potential). 
TRANSMEM   48    68  21     Signal-anchor for type II membrane protein (Potential). 
TOPO_DOM   69   317  249     Extracellular (Potential). 
SITE   139   140  2     Cleavage (By similarity). 
CARBOHYD   171   171        N-linked (GlcNAc...) (Potential). 
CARBOHYD   198   198        N-linked (GlcNAc...) (Potential). 
VAR_SEQ   1    73        Missing (in isoform 2). VSP_006447
VAR_SEQ   1    47        Missing (in isoform 3). VSP_006446
VARIANT   199   199  1     M -> K (in OPTB2). VAR_037424 [3D]
CONFLICT   194   194        A -> G (in Ref. 6; AAC51762). 
Sequence information
Length: 317 AA [This is the length of the unprocessed precursor] Molecular weight: 35478 Da [This is the MW of the unprocessed precursor] CRC64: 766176446348097F [This is a checksum on the sequence]
        10         20         30         40         50         60 
MRRASRDYTK YLRGSEEMGG GPGAPHEGPL HAPPPPAPHQ PPAASRSMFV ALLGLGLGQV 

        70         80         90        100        110        120 
VCSVALFFYF RAQMDPNRIS EDGTHCIYRI LRLHENADFQ DTTLESQDTK LIPDSCRRIK 

       130        140        150        160        170        180 
QAFQGAVQKE LQHIVGSQHI RAEKAMVDGS WLDLAKRSKL EAQPFAHLTI NATDIPSGSH 

       190        200        210        220        230        240 
KVSLSSWYHD RGWAKISNMT FSNGKLIVNQ DGFYYLYANI CFRHHETSGD LATEYLQLMV 

       250        260        270        280        290        300 
YVTKTSIKIP SSHTLMKGGS TKYWSGNSEF HFYSINVGGF FKLRSGEEIS IEVSNPSLLD 

       310 
PDQDATYFGA FKVRDID 

O14788 in FASTA format

View entry in raw text format (no links)
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