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UniProtKB/Swiss-Prot entry O14582


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name TPPC2_HUMAN
Primary accession number O14582
Secondary accession numbers A6NEG0 Q9HD16
Integrated into Swiss-Prot on January 23, 2002
Sequence was last modified on April 16, 2002 (Sequence version 3)
Annotations were last modified on    June 16, 2009 (Entry version 97)
Name and origin of the protein
Protein name Trafficking protein particle complex subunit 2
Synonyms Sedlin
MBP-1-interacting protein 2A
MIP-2A
Gene names
Name: TRAPPC2
Synonyms: SEDL
and
Name: TRAPPC2P1
Synonyms: SEDLP
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
DOI=10.1038/11976; PubMed=10431248 [NCBI, ExPASy, EBI, Israel, Japan]
Gedeon A.K., Colley A., Jamieson R., Thompson E.M., Rogers J., Sillence D., Tiller G.E., Mulley J.C., Gecz J.;
"Identification of the gene (SEDL) causing X-linked spondyloepiphyseal dysplasia tarda.";
Nat. Genet. 22:400-404(1999).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, AND INTERACTION WITH MBP1.
DOI=10.1128/MCB.21.2.655-662.2001; PubMed=11134351 [NCBI, ExPASy, EBI, Israel, Japan]
Ghosh A.K., Majumder M., Steele R., White R.A., Ray R.B.;
"A novel 16-kilodalton cellular protein physically interacts with and antagonizes the functional activity of c-myc promoter-binding protein 1.";
Mol. Cell. Biol. 21:655-662(2001).
[3]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
Hu G.;
"Human cDNA complete cds homolog to yeast protein P38334.";
Submitted (APR-1998) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nature02399; PubMed=15057824 [NCBI, ExPASy, EBI, Israel, Japan]
Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V., Caoile C., Chan Y.M., Christensen M., Cleland C.A., Copeland A., Dalin E., Dehal P., Denys M., Detter J.C., Escobar J., Flowers D., Fotopulos D., Garcia C., Georgescu A.M., Glavina T., Gomez M., Gonzales E., Groza M., Hammon N., Hawkins T., Haydu L., Ho I., Huang W., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., Larionov V., Leem S.-H., Lopez F., Lou Y., Lowry S., Malfatti S., Martinez D., McCready P.M., Medina C., Morgan J., Nelson K., Nolan M., Ovcharenko I., Pitluck S., Pollard M., Popkie A.P., Predki P., Quan G., Ramirez L., Rash S., Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., She X., Smith D., Slezak T., Solovyev V., Thayer N., Tice H., Tsai M., Ustaszewska A., Vo N., Wagner M., Wheeler J., Wu K., Xie G., Yang J., Dubchak I., Furey T.S., DeJong P., Dickson M., Gordon D., Eichler E.E., Pennacchio L.A., Richardson P., Stubbs L., Rokhsar D.S., Myers R.M., Rubin E.M., Lucas S.M.;
"The DNA sequence and biology of human chromosome 19.";
Nature 428:529-535(2004).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nature03440; PubMed=15772651 [NCBI, ExPASy, EBI, Israel, Japan]
Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C., Hurles M.E., Andrews T.D., Scott C.E., Searle S., Ramser J., Whittaker A., Deadman R., Carter N.P., Hunt S.E., Chen R., Cree A., Gunaratne P., Havlak P., Hodgson A., Metzker M.L., Richards S., Scott G., Steffen D., Sodergren E., Wheeler D.A., Worley K.C., Ainscough R., Ambrose K.D., Ansari-Lari M.A., Aradhya S., Ashwell R.I., Babbage A.K., Bagguley C.L., Ballabio A., Banerjee R., Barker G.E., Barlow K.F., Barrett I.P., Bates K.N., Beare D.M., Beasley H., Beasley O., Beck A., Bethel G., Blechschmidt K., Brady N., Bray-Allen S., Bridgeman A.M., Brown A.J., Brown M.J., Bonnin D., Bruford E.A., Buhay C., Burch P., Burford D., Burgess J., Burrill W., Burton J., Bye J.M., Carder C., Carrel L., Chako J., Chapman J.C., Chavez D., Chen E., Chen G., Chen Y., Chen Z., Chinault C., Ciccodicola A., Clark S.Y., Clarke G., Clee C.M., Clegg S., Clerc-Blankenburg K., Clifford K., Cobley V., Cole C.G., Conquer J.S., Corby N., Connor R.E., David R., Davies J., Davis C., Davis J., Delgado O., Deshazo D., Dhami P., Ding Y., Dinh H., Dodsworth S., Draper H., Dugan-Rocha S., Dunham A., Dunn M., Durbin K.J., Dutta I., Eades T., Ellwood M., Emery-Cohen A., Errington H., Evans K.L., Faulkner L., Francis F., Frankland J., Fraser A.E., Galgoczy P., Gilbert J., Gill R., Gloeckner G., Gregory S.G., Gribble S., Griffiths C., Grocock R., Gu Y., Gwilliam R., Hamilton C., Hart E.A., Hawes A., Heath P.D., Heitmann K., Hennig S., Hernandez J., Hinzmann B., Ho S., Hoffs M., Howden P.J., Huckle E.J., Hume J., Hunt P.J., Hunt A.R., Isherwood J., Jacob L., Johnson D., Jones S., de Jong P.J., Joseph S.S., Keenan S., Kelly S., Kershaw J.K., Khan Z., Kioschis P., Klages S., Knights A.J., Kosiura A., Kovar-Smith C., Laird G.K., Langford C., Lawlor S., Leversha M., Lewis L., Liu W., Lloyd C., Lloyd D.M., Loulseged H., Loveland J.E., Lovell J.D., Lozado R., Lu J., Lyne R., Ma J., Maheshwari M., Matthews L.H., McDowall J., McLaren S., McMurray A., Meidl P., Meitinger T., Milne S., Miner G., Mistry S.L., Morgan M., Morris S., Mueller I., Mullikin J.C., Nguyen N., Nordsiek G., Nyakatura G., O'dell C.N., Okwuonu G., Palmer S., Pandian R., Parker D., Parrish J., Pasternak S., Patel D., Pearce A.V., Pearson D.M., Pelan S.E., Perez L., Porter K.M., Ramsey Y., Reichwald K., Rhodes S., Ridler K.A., Schlessinger D., Schueler M.G., Sehra H.K., Shaw-Smith C., Shen H., Sheridan E.M., Shownkeen R., Skuce C.D., Smith M.L., Sotheran E.C., Steingruber H.E., Steward C.A., Storey R., Swann R.M., Swarbreck D., Tabor P.E., Taudien S., Taylor T., Teague B., Thomas K., Thorpe A., Timms K., Tracey A., Trevanion S., Tromans A.C., d'Urso M., Verduzco D., Villasana D., Waldron L., Wall M., Wang Q., Warren J., Warry G.L., Wei X., West A., Whitehead S.L., Whiteley M.N., Wilkinson J.E., Willey D.L., Williams G., Williams L., Williamson A., Williamson H., Wilming L., Woodmansey R.L., Wray P.W., Yen J., Zhang J., Zhou J., Zoghbi H., Zorilla S., Buck D., Reinhardt R., Poustka A., Rosenthal A., Lehrach H., Meindl A., Minx P.J., Hillier L.W., Willard H.F., Wilson R.K., Waterston R.H., Rice C.M., Vaudin M., Coulson A., Nelson D.L., Weinstock G., Sulston J.E., Durbin R.M., Hubbard T., Gibbs R.A., Beck S., Rogers J., Bentley D.R.;
"The DNA sequence of the human X chromosome.";
Nature 434:325-337(2005).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
TISSUE=Brain, Lung, Ovary, and Prostate;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[7]
GENOMIC ORGANIZATION, ALTERNATIVE SPLICING, AND SUBCELLULAR LOCATION.
DOI=10.1006/geno.2000.6326; PubMed=11031107 [NCBI, ExPASy, EBI, Israel, Japan]
Gecz J., Hillman M.A., Gedeon A.K., Cox T.C., Baker E., Mulley J.C.;
"Gene structure and expression study of the SEDL gene for spondyloepiphyseal dysplasia tarda.";
Genomics 69:242-251(2000).
[8]
IDENTIFICATION IN TRAPP COMPLEX.
DOI=10.1038/415141a; PubMed=11805826 [NCBI, ExPASy, EBI, Israel, Japan]
Gavin A.-C., Boesche M., Krause R., Grandi P., Marzioch M., Bauer A., Schultz J., Rick J.M., Michon A.-M., Cruciat C.-M., Remor M., Hoefert C., Schelder M., Brajenovic M., Ruffner H., Merino A., Klein K., Hudak M., Dickson D., Rudi T., Gnau V., Bauch A., Bastuck S., Huhse B., Leutwein C., Heurtier M.-A., Copley R.R., Edelmann A., Querfurth E., Rybin V., Drewes G., Raida M., Bouwmeester T., Bork P., Seraphin B., Kuster B., Neubauer G., Superti-Furga G.;
"Functional organization of the yeast proteome by systematic analysis of protein complexes.";
Nature 415:141-147(2002).
[9]
IDENTIFICATION [LARGE SCALE ANALYSIS], AND MASS SPECTROMETRY.
Colinge J., Superti-Furga G., Bennett K.L.;
Submitted (OCT-2008) to UniProtKB.
[10]
VARIANTS SEDT TYR-47; LEU-73 AND ASP-130.
DOI=10.1086/320592; PubMed=11349230 [NCBI, ExPASy, EBI, Israel, Japan]
Gedeon A.K., Tiller G.E., Le Merrer M., Heuertz S., Tranebjaerg L., Chitayat D., Robertson S., Glass I.A., Savarirayan R., Cole W.G., Rimoin D.L., Kousseff B.G., Ohashi H., Zabel B., Munnich A., Gecz J., Mulley J.C.;
"The molecular basis of X-linked spondyloepiphyseal dysplasia tarda.";
Am. J. Hum. Genet. 68:1386-1397(2001).
[11]
VARIANT SEDT SER-83.
DOI=10.1136/jmg.38.6.409; PubMed=11424925 [NCBI, ExPASy, EBI, Israel, Japan]
Grunebaum E., Arpaia E., MacKenzie J.J., Fitzpatrick J., Ray P.N., Roifman C.M.;
"A missense mutation in the SEDL gene results in delayed onset of X linked spondyloepiphyseal dysplasia in a large pedigree.";
J. Med. Genet. 38:409-411(2001).
Comments
  • FUNCTION: Prevents MBP1-mediated transcriptional repression and antagonizes MBP1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.
  • SUBUNIT: Part of the multisubunit TRAPP (transport protein particle) complex. Interacts with MBP1.
  • SUBCELLULAR LOCATION: Cytoplasm, perinuclear region. Endoplasmic reticulum. Golgi apparatus. Note=Localized in perinuclear granular structures.
  • ALTERNATIVE PRODUCTS: 2 named isoforms [FASTA] produced by alternative splicing. Additional isoforms seem to exist.
    Name1
    SynonymsMajor
    Isoform IDO14582-1
    This is the isoform sequence displayed in this entry.
    Name2
    SynonymsMinor
    Isoform IDO14582-2
    Features which should be applied to build the isoform sequence: VSP_006040.
  • TISSUE SPECIFICITY: Widely expressed.
  • DISEASE: Defects in TRAPPC2 are the cause of spondyloepiphyseal dysplasia tarda (SEDT) [MIM:313400]. SEDT is an X-linked recessive disorder of endochondral bone formation.
  • SIMILARITY: Belongs to the TRAPP small subunits family. Sedlin subfamily.
  • CAUTION: There are 2 copies of the gene for this protein: one on chromosome X and the other on chromosome 19; the one on 19 is said to be a processed pseudogene that shares a non-coding exon with ZNF547.
  • WEB RESOURCE: Name=GeneReviews; URL="http://www.genetests.org/query?gene=TRAPPC2";.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF157065; AAD49845.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF157062; AAD49845.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF157063; AAD49845.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF157064; AAD49845.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF291676; AAG02469.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF058918; AAC14421.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC003037; -; NOT_ANNOTATED_CDS; Genomic_DNA.[EMBL / GenBank / DDBJ]
AC003002; AAB80684.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC008889; AAH08889.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC016915; AAH16915.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC032809; AAH32809.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC052618; AAH52618.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00005119; -.
IPI00217250; -.
RefSeq NP_001011658.1; -.
NP_055378.1; -.
UniGene Hs.446620
3D structure databases
SMR O14582; 1-140.
ModBase O14582.
Protein-protein interaction databases
IntAct O14582; 1.
Organism-specific databases
GeneCards GC0XM013640; -.
H-InvDB HIX0015497; -.
HIX0016661; -.
HGNC HGNC:23068; TRAPPC2.
HGNC:10710; TRAPPC2P1.
GenAtlas TRAPPC2.
HPA CAB004665; -.
MIM 300202; gene. [NCBI / EBI]
313400; phenotype. [NCBI / EBI]
Orphanet 253; Spondyloepiphyseal dysplasia.
93284; Spondyloepiphyseal dysplasia tarda.
PharmGKB PA35631; -.
Gene expression databases
ArrayExpress O14582; -.
Bgee O14582; -.
CleanEx HS_TRAPPC2; -.
GermOnline ENSG00000152433; Homo sapiens.
ENSG00000196459; Homo sapiens.
Ontologies
GO
GO:0005783; Cellular component: endoplasmic reticulum (inferred from electronic annotation from UniProtKB-SubCell).
GO:0005794; Cellular component: Golgi apparatus (inferred from electronic annotation from UniProtKB-SubCell).
GO:0048471; Cellular component: perinuclear region of cytoplasm (inferred from electronic annotation from UniProtKB-SubCell).
GO:0008134; Molecular function: transcription factor binding (inferred from physical interaction from UniProtKB).
GO:0006888; Biological process: ER to Golgi vesicle-mediated transport (non-traceable author statement from UniProtKB).
GO:0006355; Biological process: regulation of transcription, DNA-dependent (inferred from direct assay from UniProtKB).
GO:0001501; Biological process: skeletal system development (traceable author statement from ProtInc).
GO:0006350; Biological process: transcription (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR006722; Sedlin.
Graphical view of domain structure.
PANTHER PTHR12403; Sedlin; 1.
Pfam PF04628; Sedlin_N; 1.
Pfam graphical view of domain structure.
Proteomic databases
PRIDE O14582; -.
Genome annotation databases
Ensembl ENSG00000196459; Homo sapiens. [Contig view]
GeneID 6399; -.
KEGG hsa:6399; -.
Phylogenomic databases
HOVERGEN O14582; -.
OMA O14582; GIKNFFN.
Other
NextBio 24860; -.
SOURCE TRAPPC2; Homo sapiens.
ProtoNet O14582.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Alternative splicing; Cytoplasm; Disease mutation; Endoplasmic reticulum; ER-Golgi transport; Golgi apparatus; Transcription; Transport.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   140  140     Trafficking protein particle complex subunit 2. PRO_0000211566
VAR_SEQ   80    80        H -> HILTFLVK (in isoform 2). VSP_006040
VARIANT   47    47  1     D -> Y (in SEDT). VAR_012358 [3D]
VARIANT   73    73  1     S -> L (in SEDT). VAR_012359 [3D]
VARIANT   83    83  1     F -> S (in SEDT; mild form). VAR_012361 [3D]
VARIANT   130   130  1     V -> D (in SEDT). VAR_012360 [3D]
CONFLICT   105   105        L -> P (in Ref. 2; AAG02469). 
Sequence information
Length: 140 AA [This is the length of the unprocessed precursor] Molecular weight: 16445 Da [This is the MW of the unprocessed precursor] CRC64: B099943C6F88952C [This is a checksum on the sequence]
        10         20         30         40         50         60 
MSGSFYFVIV GHHDNPVFEM EFLPAGKAES KDDHRHLNQF IAHAALDLVD ENMWLSNNMY 

        70         80         90        100        110        120 
LKTVDKFNEW FVSAFVTAGH MRFIMLHDIR QEDGIKNFFT DVYDLYIKFS MNPFYEPNSP 

       130        140 
IRSSAFDRKV QFLGKKHLLS 

O14582 in FASTA format

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