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UniProtKB/Swiss-Prot entry O00294


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name TULP1_HUMAN
Primary accession number O00294
Secondary accession numbers O43536 Q5TGM5 Q8N571
Integrated into Swiss-Prot on May 30, 2000
Sequence was last modified on September 23, 2008 (Sequence version 3)
Annotations were last modified on    June 16, 2009 (Entry version 79)
Name and origin of the protein
Protein name Tubby-related protein 1
Synonym Tubby-like protein 1
Gene name
Name: TULP1
Synonyms: TUBL1
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND VARIANTS ARG-67 AND ASN-261.
TISSUE=Retina;
DOI=10.1073/pnas.94.7.3128; PubMed=9096357 [NCBI, ExPASy, EBI, Israel, Japan]
North M.A., Naggert J.K., Yan Y., Noben-Trauth K., Nishina P.M.;
"Molecular characterization of TUB, TULP1, and TULP2, members of the novel tubby gene family and their possible relation to ocular diseases.";
Proc. Natl. Acad. Sci. U.S.A. 94:3128-3133(1997).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANTS ARG-67 AND ASN-261.
DOI=10.1038/ng0298-177; PubMed=9462751 [NCBI, ExPASy, EBI, Israel, Japan]
Banerjee P., Kleyn P.W., Knowles J.A., Lewis C.A., Ross B.M., Parano E., Kovats S.G., Lee J.J., Penchaszadeh G.K., Ott J., Jacobson S.G., Gilliam T.C.;
"TULP1 mutation in two extended Dominican kindreds with autosomal recessive retinitis pigmentosa.";
Nat. Genet. 18:177-179(1998).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nature02055; PubMed=14574404 [NCBI, ExPASy, EBI, Israel, Japan]
Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D., Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.;
"The DNA sequence and analysis of human chromosome 6.";
Nature 425:805-811(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), AND VARIANT ASN-261.
TISSUE=Eye;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
VARIANTS RP14 120-GLU--ASP-127 DEL; ARG-489 AND THR-496.
DOI=10.1016/S0140-6736(05)79384-3; PubMed=9660588 [NCBI, ExPASy, EBI, Israel, Japan]
Gu S., Lennon A., Li Y., Lorenz B., Fossarello M., North M., Gal A., Wright A.;
"Tubby-like protein-1 mutations in autosomal recessive retinitis pigmentosa.";
Lancet 351:1103-1104(1998).
[6]
VARIANTS RP14 PRO-420; LYS-459 AND LEU-491.
DOI=10.1038/ng0298-174; PubMed=9462750 [NCBI, ExPASy, EBI, Israel, Japan]
Hagstrom S.A., North M.A., Nishina P.M., Berson E.L., Dryja T.P.;
"Recessive mutations in the gene encoding the tubby-like protein TULP1 in patients with retinitis pigmentosa.";
Nat. Genet. 18:174-176(1998).
[7]
VARIANT RP14 SER-382.
DOI=10.1167/iovs.04-0544; PubMed=15557452 [NCBI, ExPASy, EBI, Israel, Japan]
Kondo H., Qin M., Mizota A., Kondo M., Hayashi H., Hayashi K., Oshima K., Tahira T., Hayashi K.;
"A homozygosity-based search for mutations in patients with autosomal recessive retinitis pigmentosa, using microsatellite markers.";
Invest. Ophthalmol. Vis. Sci. 45:4433-4439(2004).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
U82468; AAB53700.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF034923; AAB97966.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF034919; AAB97966.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF034920; AAB97966.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF034921; AAB97966.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF034922; AAB97966.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AL033519; CAI20251.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC032714; AAH32714.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC065261; AAH65261.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00010894; -.
IPI00827823; -.
RefSeq NP_003313.3; -.
UniGene Hs.485208
3D structure databases
PDB
2FIM; X-ray; 1.90 A; A/B=290-542.[ExPASy / RCSB / EBI]
3C5N; X-ray; 1.80 A; A/B=291-536.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 2FIM; -.
3C5N; -.
ModBase O00294.
Protein-protein interaction databases
IntAct O00294; 3.
PTM databases
PhosphoSite O00294; -.
Organism-specific databases
GeneCards GC06M035573; -.
H-InvDB HIX0005807; -.
HGNC HGNC:12423; TULP1.
GenAtlas TULP1.
MIM 600132; phenotype. [NCBI / EBI]
602280; gene. [NCBI / EBI]
Orphanet 65; Leber amaurosis, congenital.
791; Retinitis pigmentosa.
PharmGKB PA37085; -.
Gene expression databases
ArrayExpress O00294; -.
Bgee O00294; -.
CleanEx HS_TULP1; -.
GermOnline ENSG00000112041; Homo sapiens.
Ontologies
GO
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
GO:0050896; Biological process: response to stimulus (inferred from electronic annotation from UniProtKB-KW).
GO:0007601; Biological process: visual perception (traceable author statement from ProtInc).
QuickGo view.
Family and domain databases
InterPro IPR000007; Tubby_C.
IPR018066; Tubby_C_CS.
Graphical view of domain structure.
Gene3D G3DSA:3.20.90.10; Tubby_C; 1.
Pfam PF01167; Tub; 1.
Pfam graphical view of domain structure.
PRINTS PR01573; SUPERTUBBY.
PROSITE PS01200; TUB_1; 1.
PS01201; TUB_2; 1.
Genome annotation databases
Ensembl ENSG00000112041; Homo sapiens. [Contig view]
GeneID 7287; -.
KEGG hsa:7287; -.
Phylogenomic databases
HOGENOM O00294; -.
HOVERGEN O00294; -.
OMA O00294; GQNPQRG.
Other
NextBio 28491; -.
SOURCE TULP1; Homo sapiens.
ProtoNet O00294.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Alternative splicing; Disease mutation; Polymorphism; Retinitis pigmentosa; Sensory transduction; Vision.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   542  542     Tubby-related protein 1. PRO_0000186466
COMPBIAS   115   131  17     Poly-Glu. 
COMPBIAS   248   254  7     Poly-Glu. 
VAR_SEQ   64   116        Missing (in isoform 2). VSP_023031
VARIANT   67    67  1     T -> R (in dbSNP:rs7764472 [NCBI]). VAR_008274 
VARIANT   120   127  8     Missing (in RP14). VAR_013310
VARIANT   245   245  1     A -> V (in RP14). VAR_008275 
VARIANT   259   259  1     I -> T (in RP14; dbSNP:rs2064317 [NCBI]). VAR_008276 
VARIANT   261   261  1     K -> N (in dbSNP:rs2064318 [NCBI]). VAR_034575 
VARIANT   261   261  1     K -> T (in RP14). VAR_008277 
VARIANT   378   378  1     R -> H (in RP14). VAR_008278 [3D]
VARIANT   382   382  1     F -> S (in RP14). VAR_037584 [3D]
VARIANT   420   420  1     R -> P (in RP14). VAR_007941 [3D]
VARIANT   454   454  1     T -> M (in RP14). VAR_008279 [3D]
VARIANT   459   459  1     I -> K (in RP14). VAR_007942 [3D]
VARIANT   489   489  1     K -> R (in RP14). VAR_008280 [3D]
VARIANT   491   491  1     F -> L (in RP14). VAR_007943 [3D]
VARIANT   496   496  1     A -> T (in RP14). VAR_008281 [3D]
HELIX   294   296  3      
STRAND   305   312  8      
STRAND   323   328  6      
STRAND   330   332  3      
STRAND   334   341  8      
STRAND   349   354  6      
STRAND   366   372  7      
STRAND   374   382  9      
STRAND   384   386  3      
HELIX   388   390  3      
HELIX   396   398  3      
STRAND   402   408  7      
STRAND   421   426  6      
HELIX   446   452  7      
STRAND   458   463  6      
STRAND   467   469  3      
TURN   470   473  4      
STRAND   474   476  3      
STRAND   491   494  4      
STRAND   503   510  8      
STRAND   513   518  6      
HELIX   524   533  10      
Sequence information
Length: 542 AA [This is the length of the unprocessed precursor] Molecular weight: 60609 Da [This is the MW of the unprocessed precursor] CRC64: 65320103E2674B60 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MPLRDETLRE VWASDSGHEE ESLSPEAPRR PKQRPAPAQR LRKKRTEAPE SPCPTGSKPR 

        70         80         90        100        110        120 
KPGAGRTGRP REEPSPDPAQ ARAPQTVYAR FLRDPEAKKR DPRETFLVAR APDAEDEEEE 

       130        140        150        160        170        180 
EEEDEEDEEE EAEEKKEKIL LPPKKPLREK SSADLKERRA KAQGPRGDLG SPDPPPKPLR 

       190        200        210        220        230        240 
VRNKEAPAGE GTKMRKTKKK GSGEADKDPS GSPASARKSP AAMFLVGEGS PDKKALKKKG 

       250        260        270        280        290        300 
TPKGARKEEE EEEEAATVIK KSNQKGKAKG KGKKKAKEER APSPPVEVDE PREFVLRPAP 

       310        320        330        340        350        360 
QGRTVRCRLT RDKKGMDRGM YPSYFLHLDT EKKVFLLAGR KRKRSKTANY LISIDPTNLS 

       370        380        390        400        410        420 
RGGENFIGKL RSNLLGNRFT VFDNGQNPQR GYSTNVASLR QELAAVIYET NVLGFRGPRR 

       430        440        450        460        470        480 
MTVIIPGMSA ENERVPIRPR NASDGLLVRW QNKTLESLIE LHNKPPVWND DSGSYTLNFQ 

       490        500        510        520        530        540 
GRVTQASVKN FQIVHADDPD YIVLQFGRVA EDAFTLDYRY PLCALQAFAI ALSSFDGKLA 


CE 

O00294 in FASTA format

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