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UniProtKB/Swiss-Prot entry O00142


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name KITM_HUMAN
Primary accession number O00142
Secondary accession number O15238
Integrated into Swiss-Prot on November 1, 1997
Sequence was last modified on January 17, 2003 (Sequence version 3)
Annotations were last modified on    June 16, 2009 (Entry version 81)
Name and origin of the protein
Protein name Thymidine kinase 2, mitochondrial [Precursor]
Synonyms EC 2.7.1.21
Mt-TK
Gene name
Name: TK2
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM SHORT).
TISSUE=Liver;
DOI=10.1074/jbc.272.13.8454; PubMed=9079672 [NCBI, ExPASy, EBI, Israel, Japan]
Johansson M., Karlsson A.;
"Cloning of the cDNA and chromosome localization of the gene for human thymidine kinase 2.";
J. Biol. Chem. 272:8454-8458(1997).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM LONG), AND SEQUENCE REVISION TO 37 AND 240-241.
Wang L.;
Submitted (SEP-2002) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [MRNA] OF 34-266 (ISOFORM LONG), PROTEIN SEQUENCE OF 34-61 (ISOFORM LONG), AND CHARACTERIZATION.
TISSUE=Brain;
DOI=10.1016/S0014-5793(98)01711-6; PubMed=9989599 [NCBI, ExPASy, EBI, Israel, Japan]
Wang L., Munch-Petersen B., Herrstroem Sjoeberg A., Hellman U., Bergman T., Joernvall H., Eriksson S.;
"Human thymidine kinase 2: molecular cloning and characterisation of the enzyme activity with antiviral and cytostatic nucleoside substrates.";
FEBS Lett. 443:170-174(1999).
[4]
VARIANTS MDS ASN-121 AND ASN-212.
DOI=10.1038/ng751; PubMed=11687801 [NCBI, ExPASy, EBI, Israel, Japan]
Saada A., Shaag A., Mandel H., Nevo Y., Eriksson S., Elpeleg O.;
"Mutant mitochondrial thymidine kinase in mitochondrial DNA depletion myopathy.";
Nat. Genet. 29:342-344(2001).
[5]
VARIANTS MDS MET-53; MET-108 AND ASN-121.
PubMed=12391347 [NCBI, ExPASy, EBI, Israel, Japan]
Mancuso M., Salviati L., Sacconi S., Otaegui D., Camano P., Marina A., Bacman S., Moraes C.T., Carlo J.R., Garcia M., Garcia-Alvarez M., Monzon L., Naini A.B., Hirano M., Bonilla E., Taratuto A.L., DiMauro S., Vu T.H.;
"Mitochondrial DNA depletion: mutations in thymidine kinase gene with myopathy and SMA.";
Neurology 59:1197-1202(2002).
[6]
VARIANTS MDS MET-108 AND LYS-192, AND CHARACTERIZATION OF VARIANTS MDS MET-108 AND LYS-192.
DOI=10.1016/j.ymgme.2004.09.005; PubMed=15639197 [NCBI, ExPASy, EBI, Israel, Japan]
Wang L., Limongelli A., Vila M.R., Carrara F., Zeviani M., Eriksson S.;
"Molecular insight into mitochondrial DNA depletion syndrome in two patients with novel mutations in the deoxyguanosine kinase and thymidine kinase 2 genes.";
Mol. Genet. Metab. 84:75-82(2005).
[7]
VARIANTS MDS MET-64 AND TRP-183.
DOI=10.1016/j.nmd.2005.03.010; PubMed=15907288 [NCBI, ExPASy, EBI, Israel, Japan]
Tulinius M., Moslemi A.-R., Darin N., Holme E., Oldfors A.;
"Novel mutations in the thymidine kinase 2 gene (TK2) associated with fatal mitochondrial myopathy and mitochondrial DNA depletion.";
Neuromuscul. Disord. 15:412-415(2005).
Comments
  • FUNCTION: Deoxyribonucleoside kinase that phosphorylates thymidine, deoxycytidine, and deoxyuridine. Also phosphorylates anti-viral and anti-cancer nucleoside analogs.
  • CATALYTIC ACTIVITY: ATP + thymidine = ADP + thymidine 5'-phosphate.
  • SUBUNIT: Monomer.
  • SUBCELLULAR LOCATION: Mitochondrion.
  • ALTERNATIVE PRODUCTS: 2 named isoforms [FASTA] produced by alternative splicing.
    NameLong
    Isoform IDO00142-1
    This is the isoform sequence displayed in this entry.
    NameShort
    Isoform IDO00142-2
    Note: No experimental confirmation available.
    Features which should be applied to build the isoform sequence: VSP_003028.
  • TISSUE SPECIFICITY: Predominantly expressed in liver, pancreas, muscle, and brain.
  • DISEASE: Defects in TK2 are a cause of myopathic mitochondrial DNA depletion syndrome (MDS) [MIM:609560]. MDS is a clinically heterogeneous group of disorders characterized by a reduction in mitochondrial DNA (mtDNA) copy number. Primary mtDNA depletion is inherited as an autosomal recessive trait and may affect single organs, typically muscle or liver, or multiple tissues. The myopathic form of mtDNA depletion syndrome is a slowly progressive mitochondrial disorder starting in childhood and associated with less severe depletion of mtDNA in skeletal muscle (66 to 86%) compared to the hepatocerebral form of mtDNA depletion syndrome which shows up to 99% mtDNA depletion in liver.
  • SIMILARITY: Belongs to the DCK/DGK family.
  • WEB RESOURCE: Name=GeneReviews; URL="http://www.genetests.org/query?gene=TK2";.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
U77088; AAC51167.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Y10498; CAA71523.3; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00215650; -.
IPI00337439; -.
UniGene Hs.512619
3D structure databases
HSSP Q9XZT6; 1OT3. [HSSP ENTRY / PDB]
ModBase O00142.
Enzyme and pathway databases
BRENDA 2.7.1.21; 247.
Reactome REACT_152; Cell Cycle, Mitotic.
REACT_1698; Nucleotide metabolism.
Organism-specific databases
GeneCards GC16M065102; -.
H-InvDB HIX0013113; -.
HIX0021286; -.
HGNC HGNC:11831; TK2.
GenAtlas TK2.
MIM 188250; gene. [NCBI / EBI]
609560; phenotype. [NCBI / EBI]
Orphanet 35698; Mitochondrial DNA depletion syndrome.
PharmGKB PA134884391; -.
Gene expression databases
ArrayExpress O00142; -.
Bgee O00142; -.
CleanEx HS_TK2; -.
GermOnline ENSG00000166548; Homo sapiens.
Ontologies
GO
GO:0005524; Molecular function: ATP binding (inferred from electronic annotation from UniProtKB-KW).
GO:0016773; Molecular function: phosphotransferase activity, alcohol group as acceptor (inferred from electronic annotation from InterPro).
GO:0004797; Molecular function: thymidine kinase activity (traceable author statement from ProtInc).
GO:0006260; Biological process: DNA replication (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR002624; Deoxynucleoside_kinase.
Graphical view of domain structure.
PANTHER PTHR10513; dNK; 1.
Pfam PF01712; dNK; 1.
Pfam graphical view of domain structure.
Genome annotation databases
Ensembl ENSG00000166548; Homo sapiens. [Contig view]
Phylogenomic databases
HOVERGEN O00142; -.
Other
SOURCE TK2; Homo sapiens.
ProtoNet O00142.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Alternative splicing; ATP-binding; Direct protein sequencing; Disease mutation; DNA synthesis; Kinase; Mitochondrion; Nucleotide-binding; Transferase; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    33  33     Mitochondrion. 
CHAIN   34   266  233     Thymidine kinase 2, mitochondrial. PRO_0000016842
NP_BIND   57    64  8     ATP (Potential). 
VAR_SEQ   1    41        MLLWPLRGWAARALRCFGPGSRGSPASGPGPRRVQR RAWPP -> MGAFCQRPSS (in isoform Short). VSP_003028
VARIANT   53    53  1     I -> M (in MDS). VAR_019419 
VARIANT   64    64  1     T -> M (in MDS). VAR_023790 
VARIANT   108   108  1     T -> M (in MDS; reduction of activity). VAR_019420 
VARIANT   121   121  1     H -> N (in MDS). VAR_019421 
VARIANT   183   183  1     R -> W (in MDS). VAR_023791 
VARIANT   192   192  1     R -> K (in MDS; reduction of activity). VAR_023792 
VARIANT   212   212  1     I -> N (in MDS). VAR_019422 
CONFLICT   61    61        S -> G (in Ref. 1; AAC51167). 
CONFLICT   241   241        Missing (in Ref. 1; AAC51167). 
Sequence information
Length: 266 AA [This is the length of the unprocessed precursor] Molecular weight: 31142 Da [This is the MW of the unprocessed precursor] CRC64: 5387470F210F8695 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MLLWPLRGWA ARALRCFGPG SRGSPASGPG PRRVQRRAWP PDKEQEKEKK SVICVEGNIA 

        70         80         90        100        110        120 
SGKTTCLEFF SNATDVEVLT EPVSKWRNVR GHNPLGLMYH DASRWGLTLQ TYVQLTMLDR 

       130        140        150        160        170        180 
HTRPQVSSVR LMERSIHSAR YIFVENLYRS GKMPEVDYVV LSEWFDWILR NMDVSVDLIV 

       190        200        210        220        230        240 
YLRTNPETCY QRLKKRCREE EKVIPLEYLE AIHHLHEEWL IKGSLFPMAA PVLVIEADHH 

       250        260 
HMERMLELFE QNRDRILTPE NRKHCP 

O00142 in FASTA format

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