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UniProtKB/Swiss-Prot entry P41088


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name CFI1_ARATH
Primary accession number P41088
Secondary accession numbers Q8W532 Q9LE13 Q9LF74 Q9LF75
Integrated into Swiss-Prot on February 1, 1995
Sequence was last modified on July 11, 2002 (Sequence version 2)
Annotations were last modified on    July 22, 2008 (Entry version 65)
Name and origin of the protein
Protein name Chalcone--flavonone isomerase 1
Synonyms Chalcone isomerase 1
EC 5.5.1.6
Protein TRANSPARENT TESTA 5
Gene name
Name: CHI1
Synonyms: CFI, TT5
OrderedLocusNames: At3g55120
ORFNames: T15C9_120
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND FUNCTION.
STRAIN=cv. Columbia, and cv. Landsberg erecta;
DOI=10.1105/tpc.4.3.333; PubMed=1354004 [NCBI, ExPASy, EBI, Israel, Japan]
Shirley B.W., Hanley S., Goodman H.M.;
"Effects of ionizing radiation on a plant genome: analysis of two Arabidopsis transparent testa mutations.";
Plant Cell 4:333-347(1992).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=cv. Gr-5, cv. Ita-0, cv. Mh-0, cv. Per-1, cv. Rv-1, and cv. Wlp-2;
PubMed=10835405 [NCBI, ExPASy, EBI, Israel, Japan]
Kuittinen H., Aguade M.;
"Nucleotide variation at the chalcone isomerase locus in Arabidopsis thaliana.";
Genetics 155:863-872(2000).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=cv. Gran-10, cv. Gran-2, cv. Gran-3, cv. Gran-4, cv. Gran-5, cv. Gran-6, cv. Gran-7, cv. Gran-8, cv. Gran-9, cv. Lu-2, cv. Lu-3, cv. Lu-4, cv. Lu-5, cv. Lu-6, cv. Lu-7, cv. Lu-8, cv. Rv-10, cv. Rv-2, cv. Rv-3, cv. Rv-4, cv. Rv-5, cv. Rv-6, cv. Rv-7, cv. Rv-8, cv. Rv-9, cv. Tv-10, cv. Tv-2, cv. Tv-3, cv. Tv-4, cv. Tv-5, cv. Tv-6, cv. Tv-7, cv. Tv-8, cv. Tv-9, cv. Wlp-10, cv. Wlp-2, cv. Wlp-3, cv. Wlp-4, cv. Wlp-5, cv. Wlp-6, cv. Wlp-7, cv. Wlp-8, and cv. Wlp-9;
PubMed=12411612 [NCBI, ExPASy, EBI, Israel, Japan]
Kuittinen H., Salguero D., Aguade M.;
"Parallel patterns of sequence variation within and between populations at three loci of Arabidopsis thaliana.";
Mol. Biol. Evol. 19:2030-2034(2002).
[4]
NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, AND INDUCTION BY LIGHT.
STRAIN=cv. Columbia;
DOI=10.1007/s11103-004-6910-0; PubMed=15821875 [NCBI, ExPASy, EBI, Israel, Japan]
Hartmann U., Sagasser M., Mehrtens F., Stracke R., Weisshaar B.;
"Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes.";
Plant Mol. Biol. 57:155-171(2005).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/35048706; PubMed=11130713 [NCBI, ExPASy, EBI, Israel, Japan]
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
Nature 408:820-822(2000).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M86358; AAA32766.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287299; CAB94969.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287300; CAB94970.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287301; CAB94971.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287302; CAB94972.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287303; CAB94973.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287304; CAB94974.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287305; CAB94975.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287306; CAB94976.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287307; CAB94977.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287308; CAB94978.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287309; CAB94979.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287310; CAB94980.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287311; CAB94981.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287312; CAB94982.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287313; CAB94983.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287314; CAB94984.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287315; CAB94985.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287316; CAB94986.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287317; CAB94987.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287318; CAB94988.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287319; CAB94989.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287320; CAB94990.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ287321; CAB94991.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492461; CAD42187.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492462; CAD42188.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492463; CAD42189.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492464; CAD42190.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492465; CAD42191.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492466; CAD42192.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492467; CAD42193.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492468; CAD42194.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492469; CAD42195.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492470; CAD42196.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492471; CAD42197.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492472; CAD42198.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492473; CAD42199.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492474; CAD42200.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492475; CAD42201.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492476; CAD42202.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492477; CAD42203.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492478; CAD42204.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492479; CAD42205.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492480; CAD42206.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492481; CAD42207.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492482; CAD42208.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492483; CAD42209.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492484; CAD42210.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492485; CAD42211.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492486; CAD42212.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492487; CAD42213.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492488; CAD42214.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492489; CAD42215.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492490; CAD42216.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492491; CAD42217.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492492; CAD42218.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492493; CAD42219.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492494; CAD42220.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492495; CAD42221.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492496; CAD42222.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492497; CAD42223.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492498; CAD42224.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492499; CAD42225.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492500; CAD42226.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492501; CAD42227.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492502; CAD42228.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ492503; CAD42229.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ418046; CAD10782.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF439537; AAL35225.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AL132970; CAB82707.2; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BT004265; AAO42267.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BT005528; AAO63948.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY086088; AAM63295.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR JQ1687; JQ1687.
T47651; T47651.
RefSeq NP_191072.1; -.
UniGene At.27425
3D structure databases
HSSP P28012; 1JX1. [HSSP ENTRY / PDB]
ModBase P41088.
Protein-protein interaction databases
IntAct P41088; -.
Organism-specific databases
TAIR At3g55120; -.
Gene expression databases
ArrayExpress P41088; -.
GermOnline AT3G55120; Arabidopsis thaliana.
Family and domain databases
InterPro IPR003466; Chalcone_isomerase.
IPR016088; Chalcone_isomerase_3-sand.
Graphical view of domain structure.
Gene3D G3DSA:3.50.70.10; Chalcone; 1.
Pfam PF02431; Chalcone; 1.
Pfam graphical view of domain structure.
BLOCKS P41088.
Genome annotation databases
GeneID 824678; -.
GenomeReviews BA000014_GR; AT3G55120.
KEGG ath:AT3G55120; -.
NMPDR fig|3702.1.peg.16826; -.
Other
ProtoNet P41088.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Flavonoid biosynthesis; Isomerase.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   246  246     Chalcone--flavonone isomerase 1. PRO_0000166428
BINDING   59    59        Substrate (By similarity). 
BINDING   124   124        Substrate (By similarity). 
BINDING   201   201        Substrate (By similarity). 
SITE   117   117  1     Important for catalytic activity (By similarity). 
VARIANT   202   202  1     I -> V (in strain: cv. Cha-0). 
VARIANT   238   238  1     V -> L (in strain: cv. Gr-5, cv. Gran-2, cv. Gran-3, cv. Gran-5, cv. Gran-7, cv. Gran-8, cv. Gran-10, cv. Ita-0, cv. Ler, cv. Mh-0, cv. Per-1, cv. Rv-1, cv. Rv-3, cv. Rv-4, cv. Rv-5, cv. Rv-8, cv. Wlp-1, cv. Wlp-2, cv. Wlp-3, cv. Wlp-4, cv. Wlp-5, cv. Wlp-6, cv. Wlp-7, cv. Wlp-8, cv. Wlp-9 and cv. Wlp-10). 
VARIANT   246   246  1     N -> NRE (in strain: cv. Rv-2, cv. Rv-9, cv. Rv-10, cv. Tv-1, cv. Tv-2, cv. TV-6, cv. Tv-7, cv. Tv-8, cv. Tv-9 and cv. Tv-10). 
Sequence information
Length: 246 AA [This is the length of the unprocessed precursor] Molecular weight: 26596 Da [This is the MW of the unprocessed precursor] CRC64: 2EB68BF68D576B98 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV 

        70         80         90        100        110        120 
IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF EKFIKVTMKL PLTGQQYSEK 

       130        140        150        160        170        180 
VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS 

       190        200        210        220        230        240 
IPETGIAVIE NKLLAEAVLE SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE 


KLAKEN 

P41088 in FASTA format

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