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UniProtKB/Swiss-Prot entry B0KGK3

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name SDHD_PSEPG
Primary accession number B0KGK3
Secondary accession numbers None
Integrated into Swiss-Prot on May 20, 2008
Sequence was last modified on March 18, 2008 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 7)
Name and origin of the protein
Protein name Probable D-serine dehydratase
Synonyms EC 4.3.1.18
D-serine deaminase
DSD
Gene name
Name: dsdA
OrderedLocusNames: PputGB1_3112
From
Pseudomonas putida (strain GB-1) [TaxID: 76869] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Bruce D., Goodwin L., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., McCarthy J.K., Richardson P.;
"Complete sequence of Pseudomonas putida GB-1.";
Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CP000926; ABY99004.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_001669340.1; -.
3D structure databases
ModBase B0KGK3.
Ontologies
GO
GO:0008721; Molecular function: D-serine ammonia-lyase activity (inferred from electronic annotation from InterPro).
GO:0016836; Molecular function: hydro-lyase activity (inferred from electronic annotation from HAMAP).
GO:0030170; Molecular function: pyridoxal phosphate binding (inferred from electronic annotation from InterPro).
GO:0046416; Biological process: D-amino acid metabolic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_01030; -; 1.
PBIL [Tree]
InterPro IPR011780; D_Ser_am_lyase.
IPR001926; PyrdxlP-dep_enz_bsu.
IPR000634; Ser/Thr_deHydtase_PyrdxlP-BS.
Graphical view of domain structure.
PANTHER PTHR10314:SF9; D_Ser_am_lyase; 1.
Pfam PF00291; PALP; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR02035; D_Ser_am_lyase; 1.
PROSITE PS00165; DEHYDRATASE_SER_THR; 1.
Genome annotation databases
GeneID 5870897; -.
GenomeReviews CP000926_GR; PputGB1_3112.
KEGG ppg:PputGB1_3112; -.
CMR B0KGK3; PputGB1_3112.
Other
ProtoNet B0KGK3.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Lyase; Pyridoxal phosphate.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   445  445     Probable D-serine dehydratase. PRO_1000084241
BINDING   119   119        Pyridoxal phosphate (covalent) (By similarity). 
Sequence information
Length: 445 AA [This is the length of the unprocessed precursor] Molecular weight: 47568 Da [This is the MW of the unprocessed precursor] CRC64: D60F76F2C8400C3D [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MIHGKTLEAW QQSHPIIADL VALKETSWFN PGIAQASEAL RDVGLTAADV QAASARLQRF 

        70         80         90        100        110        120 
APYLATVFPE TAPAGGIIES HIAPLPLLRQ RLIEEGALRN AGSLWLKADS DLPVSGSIKA 

       130        140        150        160        170        180 
RGGIHEVLKH AEDLALAAGL ITPTDDYTRL ASEQARAFFG QYKIAVGSTG NLGLSIGIMS 

       190        200        210        220        230        240 
AKLGFQVSVH MSSDARQWKK DKLRANGVTV VEHASDYSVA VEQGRQQAAA DPSCYFVDDE 

       250        260        270        280        290        300 
NSPQLFLGYA VAAERLALQF DQAGIQVDAD HPLFVYLPCG VGGGPGGVAF GLKLVFGDAV 

       310        320        330        340        350        360 
HCIFAEPTHS PCMLLGVYTG LHDETSVQDF GIDNITAADG LAVGRPSGFV GKAMQRLIDG 

       370        380        390        400        410        420 
YYTVTDEALY RLMVIAHEQD KVKLEPSALA GVPGMLRVLQ ADEYLARQGF TPTQLQQATH 

       430        440 
LVWGTGGSMV PEDEFNAYLA KGRSV
B0KGK3 in FASTA format

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