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UniProtKB/Swiss-Prot entry B0CEL5

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDL_ACAM1
Primary accession number B0CEL5
Secondary accession numbers None
Integrated into Swiss-Prot on June 10, 2008
Sequence was last modified on February 26, 2008 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 6)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: AM1_3124
From
Acaryochloris marina (strain MBIC 11017) [TaxID: 329726] [HAMAP proteome]
Taxonomy Bacteria; Cyanobacteria; Acaryochloris.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1073/pnas.0709772105; PubMed=18252824 [NCBI, ExPASy, EBI, Israel, Japan]
Swingley W.D., Chen M., Cheung P.C., Conrad A.L., Dejesa L.C., Hao J., Honchak B.M., Karbach L.E., Kurdoglu A., Lahiri S., Mastrian S.D., Miyashita H., Page L., Ramakrishna P., Satoh S., Sattley W.M., Shimada Y., Taylor H.L., Tomo T., Tsuchiya T., Wang Z.T., Raymond J., Mimuro M., Blankenship R.E., Touchman J.W.;
"Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina.";
Proc. Natl. Acad. Sci. U.S.A. 105:2005-2010(2008).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CP000828; ABW28120.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_001517436.1; -.
3D structure databases
ModBase B0CEL5.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR005905; D_ala_D_ala.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS B0CEL5.
Genome annotation databases
GeneID 5681932; -.
GenomeReviews CP000828_GR; AM1_3124.
KEGG amr:AM1_3124; -.
CMR B0CEL5; AM1_3124.
Other
ProtoNet B0CEL5.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   352  352     D-alanine--D-alanine ligase. PRO_0000341042
DOMAIN   133   342  210     ATP-grasp. 
NP_BIND   169   224  56     ATP (By similarity). 
METAL   295   295        Magnesium or manganese 1 (By similarity). 
METAL   309   309        Magnesium or manganese 1 (By similarity). 
METAL   309   309        Magnesium or manganese 2 (By similarity). 
METAL   311   311        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 352 AA [This is the length of the unprocessed precursor] Molecular weight: 38146 Da [This is the MW of the unprocessed precursor] CRC64: 1C6DC84ABC2567CB [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MEKLRVGLVF GGCSGEHEVS ITSAKAVCGA LQTAPNPDKY EVIPFYIHKN GCWQAGEVAN 

        70         80         90        100        110        120 
QVLEMGKPQD QAEEGSRWHF PEAAASIDVW FPILHGPNGE DGTIQGLLQL MQVPYVGSGV 

       130        140        150        160        170        180 
LGSAAGMDKI AMKTVFAAAG LPQVKYESVT REQVWSDPCV FKQVCDRIDE TIGYPNFVKP 

       190        200        210        220        230        240 
ANLGSSVGIS KVRSRLELEA ALDSAASFDR RIVVEAGVVA REVECAVLGN GRPRASVVGE 

       250        260        270        280        290        300 
ISFDSDFYDY ETKYTEGRAS LQIPAPLPAD ITEKIQEMAI NAFIAVDAAG LSRVDFFYVE 

       310        320        330        340        350 
STGEVLINEI NTLPGFTSTS MYPMLWSVSG VDFPKLVDRL IQLAVEYHAP AD
B0CEL5 in FASTA format

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