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UniProtKB/Swiss-Prot entry A5FUL3

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDL_ACICJ
Primary accession number A5FUL3
Secondary accession numbers None
Integrated into Swiss-Prot on June 10, 2008
Sequence was last modified on June 12, 2007 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 14)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: Acry_0066
From
Acidiphilium cryptum (strain JF-5) [TaxID: 349163] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.;
"Complete sequence of chromosome of Acidiphilium cryptum JF-5.";
Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CP000697; ABQ29295.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_001233214.1; -.
3D structure databases
ModBase A5FUL3.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS A5FUL3.
Genome annotation databases
GeneID 5162594; -.
GenomeReviews CP000697_GR; Acry_0066.
KEGG acr:Acry_0066; -.
CMR A5FUL3; Acry_0066.
Other
ProtoNet A5FUL3.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   301  301     D-alanine--D-alanine ligase. PRO_0000341043
DOMAIN   102   295  194     ATP-grasp. 
NP_BIND   128   181  54     ATP (By similarity). 
METAL   248   248        Magnesium or manganese 1 (By similarity). 
METAL   262   262        Magnesium or manganese 1 (By similarity). 
METAL   262   262        Magnesium or manganese 2 (By similarity). 
METAL   264   264        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 301 AA [This is the length of the unprocessed precursor] Molecular weight: 32139 Da [This is the MW of the unprocessed precursor] CRC64: F822B442B250D7E6 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MKRVAVLLGG ISEEREVSLA SGRQVAAALR KAGYDVFEIE VGADLGAVIA ALTPAPDAVF 

        70         80         90        100        110        120 
NALHGRFGED GTIQGVLDYM GIPYTHSGVR ASSMAMDKGA AKAVFAAAGL PLAQHRIVPL 

       130        140        150        160        170        180 
DELAEADPLP RPYVIKPVNE GSSVGVFILR EGDNRRADIA RAWRHGSVAM TEEYVPGREL 

       190        200        210        220        230        240 
TVSVLEDRAL AVTEIRAEGF YDYTAKYAAG ASRHEIPADV PPSVSARARD VAVAAHRALG 

       250        260        270        280        290        300 
CRGATRSDFR YDDETDRLVL LEVNTQPGMT PTSLLPEQAA HCGIDFPALC AWMVENAACR 


V
A5FUL3 in FASTA format

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