ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry A5CSL3

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name DAPF_CLAM3
Primary accession number A5CSL3
Secondary accession numbers None
Integrated into Swiss-Prot on January 15, 2008
Sequence was last modified on June 12, 2007 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 12)
Name and origin of the protein
Protein name Diaminopimelate epimerase
Synonyms DAP epimerase
EC 5.1.1.7
Gene name
Name: dapF
OrderedLocusNames: CMM_2021
From
Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) [TaxID: 443906] [HAMAP proteome]
Taxonomy Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Microbacteriaceae; Clavibacter.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1128/JB.01595-07; PubMed=18192381 [NCBI, ExPASy, EBI, Israel, Japan]
Gartemann K.-H., Abt B., Bekel T., Burger A., Engemann J., Fluegel M., Gaigalat L., Goesmann A., Graefen I., Kalinowski J., Kaup O., Kirchner O., Krause L., Linke B., McHardy A., Meyer F., Pohle S., Rueckert C., Schneiker S., Zellermann E.-M., Puehler A., Eichenlaub R., Kaiser O., Bartels D.;
"The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity.";
J. Bacteriol. 190:2138-2149(2008).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AM711867; CAN02084.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_001222763.1; -.
3D structure databases
ModBase A5CSL3.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008837; Molecular function: diaminopimelate epimerase activity (inferred from electronic annotation from HAMAP).
GO:0009089; Biological process: lysine biosynthetic process via diaminopimelate (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00197; -; 1.
PBIL [Tree]
InterPro IPR001653; DAP_epimerase.
Graphical view of domain structure.
Pfam PF01678; DAP_epimerase; 2.
Pfam graphical view of domain structure.
TIGRFAMs TIGR00652; DapF; 1.
PROSITE PS01326; DAP_EPIMERASE; 1.
Genome annotation databases
GeneID 5174176; -.
GenomeReviews AM711867_GR; CMM_2021.
KEGG cmi:CMM_2021; -.
CMR A5CSL3; CMM_2021.
Other
ProtoNet A5CSL3.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Amino-acid biosynthesis; Complete proteome; Cytoplasm; Isomerase; Lysine biosynthesis.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   292  292     Diaminopimelate epimerase. PRO_1000011870
ACT_SITE   87    87        By similarity. 
ACT_SITE   230   230        By similarity. 
Sequence information
Length: 292 AA [This is the length of the unprocessed precursor] Molecular weight: 30578 Da [This is the MW of the unprocessed precursor] CRC64: B4B7E00A7FB0EBDF [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MADLQFTKGQ GTGNDFVLFA DPAGEIDLTD TQVQALCDRH FGIGADGTIR AVLSTRIPEG 

        70         80         90        100        110        120 
RAALEEDPDA EWFMDYRNVD GSPAEMCGNG IRVFTLFLIE NGLIELPPGR TIPIGTRAGV 

       130        140        150        160        170        180 
RDVQRSGSGF QVDLGRWELA GGEPLVRAKD LQVARPGLGI DVGNPHVVVA LSSEDELAEA 

       190        200        210        220        230        240 
DLAFVPQLDP EPAAGANVEL VVPADPLVVD GVGHITMRVH ERGSGETLSC GTGAAAAALA 

       250        260        270        280        290 
TRHWAGAAAP HQWRVQLPGG ALGVRMFPTE DGEHVGLSGP AELVFDGVVA LA
A5CSL3 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA) 		Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Hosted by ca flag CBR Canada Mirror sites: Australia Brazil China Korea Switzerland
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!