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UniProtKB/Swiss-Prot entry A4FY19

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DNLI_METM5
Primary accession number A4FY19
Secondary accession numbers None
Integrated into Swiss-Prot on January 15, 2008
Sequence was last modified on April 17, 2007 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 12)
Name and origin of the protein
Protein name DNA ligase
Synonyms EC 6.5.1.1
Polydeoxyribonucleotide synthase [ATP]
Gene name
Name: lig
OrderedLocusNames: MmarC5_0793
From
Methanococcus maripaludis (strain C5 / ATCC BAA-1333) [TaxID: 402880] [HAMAP proteome]
Taxonomy Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Detter J.C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Sieprawska-Lupa M., Whitman W.B., Richardson P.;
"Complete sequence of chromosome of Methanococcus maripaludis C5.";
Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CP000609; ABO35103.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_001097318.1; -.
3D structure databases
ModBase A4FY19.
Ontologies
GO
GO:0005524; Molecular function: ATP binding (inferred from electronic annotation from HAMAP).
GO:0003910; Molecular function: DNA ligase (ATP) activity (inferred from electronic annotation from HAMAP).
GO:0006310; Biological process: DNA recombination (inferred from electronic annotation from HAMAP).
GO:0006281; Biological process: DNA repair (inferred from electronic annotation from HAMAP).
GO:0006260; Biological process: DNA replication (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00407; -; 1.
PBIL [Tree]
InterPro IPR000977; DNA_ligase.
IPR012309; DNA_ligase_A_C.
IPR012310; DNA_ligase_A_M.
IPR012308; DNA_ligase_A_N.
IPR016059; DNA_ligase_CS.
IPR012340; NA-bd_OB-fold.
Graphical view of domain structure.
Gene3D G3DSA:2.40.50.140; OB_NA_bd_sub; 1.
Pfam PF04679; DNA_ligase_A_C; 1.
PF01068; DNA_ligase_A_M; 1.
PF04675; DNA_ligase_A_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR00574; dnl1; 1.
PROSITE PS00697; DNA_LIGASE_A1; 1.
PS00333; DNA_LIGASE_A2; 1.
PS50160; DNA_LIGASE_A3; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS A4FY19.
Genome annotation databases
GeneID 4928716; -.
GenomeReviews CP000609_GR; MmarC5_0793.
KEGG mmq:MmarC5_0793; -.
CMR A4FY19; MmarC5_0793.
Other
ProtoNet A4FY19.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell cycle; Cell division; Complete proteome; DNA damage; DNA recombination; DNA repair; DNA replication; Ligase; Nucleotide-binding.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   573  573     DNA ligase. PRO_1000049870
ACT_SITE   252   252        N6-AMP-lysine intermediate (By similarity). 
Sequence information
Length: 573 AA [This is the length of the unprocessed precursor] Molecular weight: 65893 Da [This is the MW of the unprocessed precursor] CRC64: BC74B0A7585AECA8 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MLFNDFCKIL DKIEKTTKRL EKTDYFVELI DFIKTNGKPE NLKQVSQITI GRVFAEFENK 

        70         80         90        100        110        120 
EIGIGPNLLL EAVKTTGISE KDLKAEIKKT GDIGTAVENL SSNIKQVSLF SQPLTLEEMY 

       130        140        150        160        170        180 
STLKKLSEIE GNSSQKKKIR IISNLLILAN PVESRYISRL ILEDMRIGMN IPTILASFSN 

       190        200        210        220        230        240 
YFNVNKENVE KIYAVTNDIG LLGEKLISGS DIENDSELHL KVFRPIKPML AQLTPSIEDA 

       250        260        270        280        290        300 
IIETKIPQFE TKYDGARVQV HKSNGEVKIY SRRLEDITNS VPELVEEIKK IDIDNIILEG 

       310        320        330        340        350        360 
ECVAMDLSSG KPRPFQDILR RFRRKYDINK MAEKIALRIY FFDVLYYNRG LIDTPLRNRR 

       370        380        390        400        410        420 
EILEKLFGTN DWDTELEKIE KEILSKKMLF SSFKLNSDDP NLAKEFFNWS LSIGHEGVMI 

       430        440        450        460        470        480 
KNPDAPYTPG SRVKTMYKVK PTLENLDVVV TRAKIGMGKR KDWYGSYEIS VKDDESNLHV 

       490        500        510        520        530        540 
IGNVGSGLTE DDLERLTKIV NEIKIEDLGE EVILEPKIVL EVTYEEIQTS EKYEMGYALR 

       550        560        570 
FPRVVQIRED KSINDINTLD DVKKIYDIER NRK
A4FY19 in FASTA format

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