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UniProtKB/Swiss-Prot entry A1WC04

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDL_ACISJ
Primary accession number A1WC04
Secondary accession numbers None
Integrated into Swiss-Prot on June 10, 2008
Sequence was last modified on February 6, 2007 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 18)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: Ajs_3668
From
Acidovorax sp. (strain JS42) [TaxID: 232721] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Stahl D., Richardson P.;
"Complete sequence of chromosome 1 of Acidovorax sp. JS42.";
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CP000539; ABM43779.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_987855.1; -.
3D structure databases
ModBase A1WC04.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS A1WC04.
Genome annotation databases
GeneID 4673646; -.
GenomeReviews CP000539_GR; Ajs_3668.
KEGG ajs:Ajs_3668; -.
CMR A1WC04; Ajs_3668.
Other
ProtoNet A1WC04.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   332  332     D-alanine--D-alanine ligase. PRO_0000341045
DOMAIN   112   312  201     ATP-grasp. 
NP_BIND   138   193  56     ATP (By similarity). 
METAL   265   265        Magnesium or manganese 1 (By similarity). 
METAL   279   279        Magnesium or manganese 1 (By similarity). 
METAL   279   279        Magnesium or manganese 2 (By similarity). 
METAL   281   281        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 332 AA [This is the length of the unprocessed precursor] Molecular weight: 35626 Da [This is the MW of the unprocessed precursor] CRC64: 654FFE07031D2598 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MSQNDLKIDV KALGKVAVLM GGTSAEREVS LMSGGGVLQA LRSRGVDAHA FDPAHSDLSE 

        70         80         90        100        110        120 
LKAHGYSRCF IALHGRHGED GTVQGALELL GIPYTGPGVM ASSIAMDKIM TKRIWRADGL 

       130        140        150        160        170        180 
PTPDWRLVSS SAETAQAFQE LGAPMIVKPS REGSTIGLTK VTSLGQCEQA YRLAAQHDPE 

       190        200        210        220        230        240 
VLCEQFIDGD ETTCPILGQG TEARALPVIR IEAPQGNYDY QNKYFTDVTQ YHCPSGLPEA 

       250        260        270        280        290        300 
EEREIQRIVV QAYRTLGCRG WARADIMIRA SDRKPFLLEI NTSPGMTGHS LVPMSANASG 

       310        320        330 
ISYPDLCLRI LASASLDALQ GRAGAAGGRE SV
A1WC04 in FASTA format

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