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UniProtKB/Swiss-Prot entry A1UTC2

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDL_BARBK
Primary accession number A1UTC2
Secondary accession numbers None
Integrated into Swiss-Prot on January 15, 2008
Sequence was last modified on February 6, 2007 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 17)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: BARBAKC583_0944
From
Bartonella bacilliformis (strain ATCC 35685 / KC583) [TaxID: 360095] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Hendrix L., Mohamoud Y., Radune D., Shvartsbeyn A., Daugherty S., Dodson R., Durkin A.S., Harkins D., Huot H., Kothari S.P., Madupu R., Li J., Nelson W.C., Shrivastava S., Giglio M.G., Haft D., Selengut J., Fraser-Ligget C., Seshadri R.;
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CP000524; ABM45252.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_989225.1; -.
3D structure databases
ModBase A1UTC2.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS A1UTC2.
Genome annotation databases
GeneID 4684804; -.
GenomeReviews CP000524_GR; BARBAKC583_0944.
KEGG bbk:BARBAKC583_0944; -.
NMPDR fig|360095.3.peg.548; -.
TIGR BARBAKC583_0944; -.
Other
ProtoNet A1UTC2.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   306  306     D-alanine--D-alanine ligase. PRO_1000030428
DOMAIN   102   300  199     ATP-grasp. 
NP_BIND   128   183  56     ATP (By similarity). 
METAL   253   253        Magnesium or manganese 1 (By similarity). 
METAL   267   267        Magnesium or manganese 1 (By similarity). 
METAL   267   267        Magnesium or manganese 2 (By similarity). 
METAL   269   269        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 306 AA [This is the length of the unprocessed precursor] Molecular weight: 33432 Da [This is the MW of the unprocessed precursor] CRC64: DD6EA747C3604B37 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MTGKHVTVLM GGWSSERSVS LSSGTACADI LEAQGYNVVR VDVDDRIVSV LEELRPTTVF 

        70         80         90        100        110        120 
NALHGPFGED GCIQGILEYL KIPYTHSGVM ASALAMDKGR AKIIAASAGV SVAPSCVMSR 

       130        140        150        160        170        180 
FSLGAEHPMK PPYVIKPIRE GSSFGVVIVG SDETMPLHDI MNNEWVYDDE IMVEKYVPGR 

       190        200        210        220        230        240 
ELTCAVLGDE VLDVCEIVPK ECFQFYDYDS KYKSGGSLHI CPAKLSSNIY QNVQRMSLAA 

       250        260        270        280        290        300 
HQAIGCRGVS RSDFRFNEET GELIWLEINT QPGMTSTSLV PDIAKASGRT YGDIVKWIVE 


DASCMR
A1UTC2 in FASTA format

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