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UniProtKB/Swiss-Prot entry A1K3U8

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDL_AZOSB
Primary accession number A1K3U8
Secondary accession numbers None
Integrated into Swiss-Prot on June 10, 2008
Sequence was last modified on February 6, 2007 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 18)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: azo0886
From
Azoarcus sp. (strain BH72) [TaxID: 62928] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nbt1243; PubMed=17057704 [NCBI, ExPASy, EBI, Israel, Japan]
Krause A., Ramakumar A., Bartels D., Battistoni F., Bekel T., Boch J., Boehm M., Friedrich F., Hurek T., Krause L., Linke B., McHardy A.C., Sarkar A., Schneiker S., Syed A.A., Thauer R., Vorhoelter F.-J., Weidner S., Puehler A., Reinhold-Hurek B., Kaiser O., Goesmann A.;
"Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72.";
Nat. Biotechnol. 24:1385-1391(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AM406670; CAL93503.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_932390.1; -.
3D structure databases
ModBase A1K3U8.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS A1K3U8.
Genome annotation databases
GeneID 4609289; -.
GenomeReviews AM406670_GR; azo0886.
KEGG azo:azo0886; -.
CMR A1K3U8; azo0886.
Other
ProtoNet A1K3U8.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   304  304     D-alanine--D-alanine ligase. PRO_0000341055
DOMAIN   104   299  196     ATP-grasp. 
NP_BIND   130   185  56     ATP (By similarity). 
METAL   253   253        Magnesium or manganese 1 (By similarity). 
METAL   266   266        Magnesium or manganese 1 (By similarity). 
METAL   266   266        Magnesium or manganese 2 (By similarity). 
METAL   268   268        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 304 AA [This is the length of the unprocessed precursor] Molecular weight: 32635 Da [This is the MW of the unprocessed precursor] CRC64: 185E9652BA24A053 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MKQRFGKVAV LFGGSSAERD VSLMSGAAVL AALQGAGVDA HAFDPAERDL HILKEEGYDR 

        70         80         90        100        110        120 
VFIALHGRGG EDGTVQGALE LMGIPYTGSG VMASALAMDK WRTKMVWLSC GLPTPRYAIL 

       130        140        150        160        170        180 
DADSDFDAIA RDLGLPIFVK PVHEGSSMGA TKVTEAGQLR AAWELAARYD SLVIAEEFIS 

       190        200        210        220        230        240 
GQELTAPFLD DRALPLVRIV APDGNYDYQH KYFTDDTRYD CPCGLPQAEE EALQALILKS 

       250        260        270        280        290        300 
ARVLGCRGWG RADLILTPEG RPYLLEMNTS PGMTGHSLVP MSARVAGMSF EALCLAILAG 


ARLG
A1K3U8 in FASTA format

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