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UniProtKB/Swiss-Prot entry A0ZZT4

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDL_BIFAA
Primary accession number A0ZZT4
Secondary accession numbers None
Integrated into Swiss-Prot on January 15, 2008
Sequence was last modified on January 23, 2007 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 17)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: BAD_0186
From
Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) [TaxID: 367928] [HAMAP proteome]
Taxonomy Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Suzuki T., Tsuda Y., Kanou N., Inoue T., Kumazaki K., Nagano S., Hirai S., Tanaka K., Watanabe K.;
"Bifidobacterium adolescentis complete genome sequence.";
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AP009256; BAF38967.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_909049.1; -.
3D structure databases
ModBase A0ZZT4.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS A0ZZT4.
Genome annotation databases
GeneID 4556245; -.
GenomeReviews AP009256_GR; BAD_0186.
KEGG bad:BAD_0186; -.
NMPDR fig|1680.3.peg.450; -.
CMR A0ZZT4; BAD_0186.
Other
ProtoNet A0ZZT4.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   378  378     D-alanine--D-alanine ligase. PRO_1000030432
DOMAIN   149   374  226     ATP-grasp. 
NP_BIND   189   247  59     ATP (By similarity). 
METAL   328   328        Magnesium or manganese 1 (By similarity). 
METAL   341   341        Magnesium or manganese 1 (By similarity). 
METAL   341   341        Magnesium or manganese 2 (By similarity). 
METAL   343   343        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 378 AA [This is the length of the unprocessed precursor] Molecular weight: 40528 Da [This is the MW of the unprocessed precursor] CRC64: BBDC4977384B8C56 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MAKKRIVVMY GGKADEHSIS CISAASALRA LDTDKFEAIP VGITKDGKWI VNGENPLGWS 

        70         80         90        100        110        120 
LDEGLPTVEK TPGAKDVVLE VALGQDGFFA REDDGTMTPF GHVDAVFPVL HGPYGEDGTI 

       130        140        150        160        170        180 
QGLFEMMGVP YVGCGVLASA ACMDKHYTKV LLAAAGIPVA PGITLDARSF DKASEFKTDA 

       190        200        210        220        230        240 
DAIMAQVSEA GLQYPLFVKP SRAGSSFGVT KVEHEGDAAE LAAAVYEASR HDWRILVEQG 

       250        260        270        280        290        300 
IDAREIECAV LCPKAGEAPQ ASWPGEIVLD KRAEGDDQFY DFDSKYMDAA ASHVEVPANL 

       310        320        330        340        350        360 
PEETLNLVRE TAKKAFVAVD GAGLSRVDTF VTKDGKVMVN EINTMPGFTS ISMYPKAWEA 

       370 
TGVRYTDLIT KLIEGVLR
A0ZZT4 in FASTA format

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