ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry A0JXX3

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name DDL_ARTS2
Primary accession number A0JXX3
Secondary accession numbers None
Integrated into Swiss-Prot on June 10, 2008
Sequence was last modified on December 12, 2006 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 16)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: Arth_2514
From
Arthrobacter sp. (strain FB24) [TaxID: 290399] [HAMAP proteome]
Taxonomy Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Arthrobacter.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Thompson S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Beasley F., Chen W., Jerke K., Nakatsu C.H., Richardson P.;
"Complete sequence of chromosome 1 of Arthrobacter sp. FB24.";
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CP000454; ABK03893.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_831993.1; -.
3D structure databases
ModBase A0JXX3.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
Graphical view of domain structure.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS A0JXX3.
Genome annotation databases
GeneID 4444920; -.
GenomeReviews CP000454_GR; Arth_2514.
KEGG art:Arth_2514; -.
TIGR Arth_2514; -.
Other
ProtoNet A0JXX3.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   382  382     D-alanine--D-alanine ligase. PRO_0000341054
DOMAIN   161   372  212     ATP-grasp. 
NP_BIND   193   248  56     ATP (By similarity). 
METAL   326   326        Magnesium or manganese 1 (By similarity). 
METAL   339   339        Magnesium or manganese 1 (By similarity). 
METAL   339   339        Magnesium or manganese 2 (By similarity). 
METAL   341   341        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 382 AA [This is the length of the unprocessed precursor] Molecular weight: 40775 Da [This is the MW of the unprocessed precursor] CRC64: 8D253FD6176B54FB [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MSEEQLNKHT APGHAKPRVA VLFGGRSSEH AVSCVTAAGV LGAIDYDKYD VIPIGIAKTG 

        70         80         90        100        110        120 
QWVLVSGDTR QWSLSASSLP EVSPSARTVT LAEIGGEHQL IVASPNEVPQ ELGAVDVVFP 

       130        140        150        160        170        180 
LLHGPFGEDG TIQGLLELSD TRYVGAGVLA SAVGMDKHYM KVVFEAAGLQ VGPYIAVTDR 

       190        200        210        220        230        240 
QWLTDPEAIR KRVDRLGYPV FVKPARAGSS MGISKVDSLE GLDAAIAAAR EHDLKLVIEA 

       250        260        270        280        290        300 
GIVGREIECA VLEGRGTEPP RTSMPGEIAV APGEHEFYDF NAKYVEDDAA SLSCPADLPD 

       310        320        330        340        350        360 
EAIARVRELA AAAFDAVGAE GLSRVDFFYT PDGELIINEI NTMPGFTPKS MYPQMWAASG 

       370        380 
LGYAELIDEL IYLALNRKTG LR
A0JXX3 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA) 		Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Hosted by ch flag SIB Switzerland Mirror sites: Australia Brazil Canada China Korea
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!