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HAMAP: Vibrio vulnificus (strain YJ016) complete proteome

General information

Species:  Vibrio vulnificus (strain YJ016)
Species code: VIBVY
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio (TaxID: 196600) [NEWT/ NCBI]
Description: Vibrio vulnificus causes primary septicemia and wound infections. It was first recognized as a causative agent of a fatal septicemic infection in 1982. Septicemia occurs following ingestion of raw seafood preferentially in subjects having underlying diseases such as liver cirrhosis, hepatitis, hemochromatosis, or diabetes mellitus. Strain YJ016 is a hospital isolate from Taiwan.
Properties: Presence of flagella: Yes
Interaction: Animal pathogen in Mammalia
Number of membranes: 2
Number of inteins:0
Statistics: Number of VIBVY entries in the UniProt Knowledgebase: 4990 (710 in UniProtKB/Swiss-Prot + 4280 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    YJ016
Genome structure:
• Chromosome I EMBL accession number BA000037 (circular; 3,354,505 bp) (download entry) (download Genome Reviews).
• Chromosome II EMBL accession number BA000038 (circular; 1,857,073 bp) (download entry) (download Genome Reviews).
• Plasmid pYJ016 EMBL accession number AP005352 (circular; 48,508 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=14656965; [ NCBI , EBI , Israel , Japan ]
Chen C.-Y., Wu K.-M., Chang Y.-C., Chang C.-H., Tsai H.-C., Liao T.-L., Liu Y.-M., Chen H.-J., Shen A.B.-T., Li J.-C., Su T.-L., Shao C.-P., Lee C.-T., Hor L.-I., Tsai S.-F. ;
"Comparative genome analysis of Vibrio vulnificus, a marine pathogen.";
Genome Res. 13:2577-2587(2003).
Web links:
Official genome site(s):
http://genome.nhri.org.tw/vv/
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Vibrio&GLspecies=vulnificus&GLstrain=YJ016
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid196600%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Vvul_YJ016
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Vibrio_vulnificus.html
NMPDR: http://www.nmpdr.org/FIG/seedviewer.cgi?pattern=196600.1;page=SearchResult
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p1430_Vib_vulni
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntvv02
VulnifiList: http://bioinfo.hku.hk/GenoList/index.pl?database=vulnifilist
 EBI Proteome Analysis page



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