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HAMAP: Vibrio fischeri (strain ATCC 700601 / ES114) complete proteome

General information

Species:  Vibrio fischeri (strain ATCC 700601 / ES114)
Species code: VIBF1
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio (TaxID: 312309) [NEWT/ NCBI]
Description: Vibrio fischeri ES114 is the light-organ symbiont of the bobtail squid Eurpymna scolopes. The marine bacterium Vibrio fischeri is known as the specific symbiont in the light-emitting organs of certain squids and fishes where it produces luminescence through the expression of the lux operon. Luminescence is controlled by acyl-homoserine lactone quorum sensing.
Properties: Presence of flagella: Yes
Interaction: Animal symbiont in Euprymna scolopes (squid)
Number of membranes: 2
Number of inteins:0
Statistics: Number of VIBF1 entries in the UniProt Knowledgebase: 3814 (539 in UniProtKB/Swiss-Prot + 3275 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 700601 / ES114
Genome structure:
• Chromosome I EMBL accession number CP000020 (circular; 2,897,536 bp) (download entry) (download Genome Reviews).
• Chromosome II EMBL accession number CP000021 (circular; 1,330,333 bp) (download entry) (download Genome Reviews).
• Plasmid pES100 EMBL accession number CP000022 (circular; 45,849 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=15703294; [ NCBI , EBI , Israel , Japan ]
Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R., Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E., Stevens A., Visick K., Whistler C., Greenberg E.P. ;
"Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners.";
Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Vibrio&GLspecies=fischeri&GLstrain=ES114
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid312309%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Vfis_ES114
NMPDR: http://www.nmpdr.org/FIG/seedviewer.cgi?pattern=312309.3;page=SearchResult
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p12986_Vib_fisch
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntvf01
 EBI Proteome Analysis page



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