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HAMAP: Synechococcus sp. (strain CC9311) complete proteome

General information

Species:  Synechococcus sp. (strain CC9311)
Species code: SYNS3
Taxonomy: Bacteria; Cyanobacteria; Chroococcales; Synechococcus (TaxID: 64471) [NEWT/ NCBI]
Description: This coastal cyanobacterium was isolated from the edge of the California Current in 1993 at 95m depth after nitrate enrichment and low light incubation. It possesses an ability to adapt to light quality (blue to green light ratios) not seen in open ocean Synechococcus strains such as WH8102 (SYNPX), as well as a larger capacity to transport, store, use and export metals (especially copper and iron). As might be expected from its environment which is comparatively rich in phosphate, it lacks a phosphate sensor- response regulator system and the number of proteins involved in phosphate metabolism is reduced compared to WH8102. The availability of this sequence now permits a comparison between open ocean and coastal water-adapted Synechococcus strains.
Properties: Presence of flagella: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of SYNS3 entries in the UniProt Knowledgebase: 2882 (292 in UniProtKB/Swiss-Prot + 2590 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    CC9311
Genome structure:
Chromosome EMBL accession number CP000435 (circular; 2,606,748 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=16938853; [ NCBI , EBI , Israel , Japan ]
Palenik B., Ren Q., Dupont C.L., Myers G.S., Heidelberg J.F., Badger J.H., Madupu R., Nelson W.C., Brinkac L.M., Dodson R.J., Durkin A.S., Daugherty S.C., Sullivan S.A., Khouri H., Mohamoud Y., Halpin R., Paulsen I.T. ;
"Genome sequence of Synechococcus CC9311: insights into adaptation to a coastal environment.";
Proc. Natl. Acad. Sci. U.S.A. 103:13555-13559(2006).
Web links:
Official genome site(s):
http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?org=gsyn
Other web sites:
CyanoBase: http://bacteria.kazusa.or.jp/cyanobase/CC9311/index.html
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid64471%5Borgn%5D
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=12530
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Syne_CC9311
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p12530_Syn_CC931
 EBI Proteome Analysis page



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