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HAMAP: Symbiobacterium thermophilum complete proteome

General information

Species:  Symbiobacterium thermophilum
Species code: SYMTH
Taxonomy: Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVIII. Incertae Sedis; Symbiobacterium (TaxID: 2734) [NEWT/ NCBI]
Description: Symbiobacterium thermophilum is an uncultivable bacterium isolated from compost that depends on microbial commensalism. The Gram-stain result indicates that S.thermophilum is Gram-negative whereas the results of the 16S ribosomal DNA phylogenic study indicates that it belongs to the Gram-positive group. Proteins associated with the S-layer have been identified in S.thermophilum and Gram variability was observed in several S-layer-coated bacteria.
Properties: Presence of flagella: Yes
Interaction: No
Number of membranes: not known
Number of inteins:0
Statistics: Number of SYMTH entries in the UniProt Knowledgebase: 3315 (354 in UniProtKB/Swiss-Prot + 2961 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    T / IAM 14863
Genome structure:
Chromosome EMBL accession number AP006840 (circular; 3,566,135 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=15383646; [ NCBI , EBI , Israel , Japan ]
Ueda K., Yamashita A., Ishikawa J., Shimada M., Watsuji T., Morimura K., Ikeda H., Hattori M., Beppu T. ;
"Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism.";
Nucleic Acids Res. 32:4937-4944(2004).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Symbiobacterium&GLspecies=thermophilum&GLstrain=Strain
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid292459%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Sthe_IAM14863
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Symbiobacterium_thermophilum.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p12994_Sym_therm
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntst07
 EBI Proteome Analysis page



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