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HAMAP: Shewanella halifaxensis (strain HAW-EB4) complete proteome

General information

Species:  Shewanella halifaxensis (strain HAW-EB4)
Species code: SHEHH
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella (TaxID: 458817) [NEWT/ NCBI]
Description: Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species.
Shewanella halifaxensis (strain HAW-EB4) is an obligately respiratory denitrifying and RDX-mineralizing bacterium isolated from sediment in a munitions-dumping area of the Emerald Basin (depth of 215 m, Atlantic Ocean), offshore of Halifax Harbour (Nova Scotia, Canada). This psychrophilic, sodium cations-requiring and slightly halophilic bacterium is able to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) at 10 degrees Celsius. RDX is a member of a family of nitramine compounds which are used in the production of explosives. These chemicals are toxic and can be a major source of contamination of marine and freshwater sediments.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of SHEHH entries in the UniProt Knowledgebase: 4276 (413 in UniProtKB/Swiss-Prot + 3863 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    HAW-EB4
Genome structure:
Chromosome EMBL accession number CP000931 (circular; 5,226,917 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Zhao J.-S., Richardson P. ;
"Complete sequence of Shewanella halifaxensis HAW-EB4.";
Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/sheha/sheha.home.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=20241
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=20241
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Shal_HAWEB4
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p20241_She_halif
 EBI Proteome Analysis page



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