Species code:	RHOPA
Taxonomy:	Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas (TaxID: 1076) [NEWT/ NCBI]
Description:	Rhodopseudomonas palustris are phototrophic, purple non-sulfur bacteria commonly found in soils and water. They fix carbon dioxide and nitrogen, produce hydrogen, and degrade diverse biomass-associated aromatic compounds under anaerobic (phototrophic) and aerobic (heterotrophic) conditions. Against the background of general metabolic versatility of the R. palustris species there is considerable strain-to-strain diversity.
Properties:	Presence of flagella: Yes Interaction: No Number of membranes: 2 Number of inteins:0
Statistics:	Number of RHOPA entries in the UniProt Knowledgebase: 4811 (449 in UniProtKB/Swiss-Prot + 4362 in UniProtKB/TrEMBL)

Genome structure:	• Chromosome EMBL accession number BX571963 (circular; 5,459,213 bp) (download entry) (download Genome Reviews). • Plasmid pRPA EMBL accession number BX571964 (circular; 8,427 bp) (download entry) (download Genome Reviews).
Reference(s):	[1] PubMed=14704707; [ NCBI , EBI , Israel , Japan ] Larimer F.W., Chain P., Hauser L., Lamerdin J.E., Malfatti S., Do L., Land M.L., Pelletier D.A., Beatty J.T., Lang A.S., Tabita F.R., Gibson J.L., Hanson T.E., Bobst C., Torres y Torres J.L., Peres C., Harrison F.H., Gibson J., Harwood C.S. ; "Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris."; Nat. Biotechnol. 22:55-61(2004).
Web links:	CyanoBase: http://bacteria.kazusa.or.jp/cyanobase/Rhodopseudomonas/index.html Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid258594%5Borgn%5D Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=57 GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Rpal_CGA009 Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Rhodopseudomonas_palustris.html PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p15750_Rho_palus RhizoDB: http://xbase.bham.ac.uk/rhizodb/genome.pl?id=1270 TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntrp02  EBI Proteome Analysis page

• Genome Proximity Viewer: This program displays the genes that are found in the genomic environment of a selected locus.
  
  
• Perform a BLAST search against all proteins from this proteome
  
  
• Download a file by FTP containing all UniProt Knowledgebase entries of this proteome
  • in UniProt Knowledgebase format
  • in FASTA format
  
  
• Retrieve set of characterized or identified proteins for this proteome
  
  
• Retrieve set of proteins with 3D structure for this proteome