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HAMAP: Pyrococcus horikoshii complete proteome

General information

Species:  Pyrococcus horikoshii
Species code: PYRHO
Taxonomy: Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus (TaxID: 53953) [NEWT/ NCBI]
Description: Hyperthermophile found in the hot waters of the Okinawa Trench. Can grow at high temperatures, favoring a temperature of 98 degrees Celsius.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins: 12 in 12 different sequences
Statistics: Number of PYRHO entries in the UniProt Knowledgebase: 2077 (465 in UniProtKB/Swiss-Prot + 1612 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    OT3
Genome structure:
Chromosome EMBL accession number BA000001 (circular; 1,738,505 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] MEDLINE=98344137; PubMed=9679194; [ NCBI , EBI , Israel , Japan ]
Kawarabayasi Y., Sawada M., Horikawa H., Haikawa Y., Hino Y., Yamamoto S., Sekine M., Baba S., Kosugi H., Hosoyama A., Nagai Y., Sakai M., Ogura K., Otsuka R., Nakazawa H., Takamiya M., Ohfuku Y., Funahashi T., Tanaka T., Kudoh Y., Yamazaki J., Kushida N., Oguchi A., Aoki K., Yoshizawa T., Nakamura Y., Robb F.T., Horikoshi K., Masuchi Y., Shizuya H., Kikuchi H. ;
"Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.";
DNA Res. 5:55-76(1998).
Web links:
Official genome site(s):
http://www.bio.nite.go.jp/dogan/MicroTop?GENOME_ID=ot3_G1
Other web sites:
ARCHAIC db: http://www.aist.go.jp/RIODB/archaic/
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Archaea&GLgenus=Pyrococcus&GLspecies=horikoshii&GLstrain=OT3
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid70601%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Phor_OT3
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/archaea/Pyrococcus_horikoshii.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p207_Pyr_horik
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntph01
 EBI Proteome Analysis page



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