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HAMAP: Pseudomonas syringae pv. tomato complete proteome

General information

Species:  Pseudomonas syringae pv. tomato
Species code: PSESM
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas (TaxID: 323) [NEWT/ NCBI]
Description: Pseudomonas syringae produces different symptoms depending on the host species and the site of infection. Considerable variation occurs both between and within different pathovars of P.syringae. Pseudomonas syringae pv. tomato causes bacterial speck on tomato and Arabidopsis.
Properties: Presence of flagella: Yes
Interaction: Plant pathogen
Number of membranes: 2
Number of inteins:0
Statistics: Number of PSESM entries in the UniProt Knowledgebase: 5424 (630 in UniProtKB/Swiss-Prot + 4794 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    DC3000
Genome structure
• Chromosome EMBL accession number AE016853 (circular; 6,397,126 bp) (download entry) (download Genome Reviews).
• Plasmid pDC3000A EMBL accession number AE016855 (circular; 73,661 bp) (download entry) (download Genome Reviews).
• Plasmid pDC3000B EMBL accession number AE016854 (circular; 67,473 bp) (download entry) (download Genome Reviews).
References
[1] MEDLINE=22834015; PubMed=12928499; [ NCBI , EBI , Israel , Japan ]
Buell C.R., Joardar V., Lindeberg M., Selengut J., Paulsen I.T., Gwinn M.L., Dodson R.J., DeBoy R.T., Durkin A.S., Kolonay J.F., Madupu R., Daugherty S.C., Brinkac L.M., Beanan M.J., Haft D.H., Nelson W.C., Davidsen T.M., Zafar N., Zhou L., Liu J., Yuan Q., Khouri H.M., Fedorova N.B., Tran B., Russell D., Berry K.J., Utterback T.R., Van Aken S.E., Feldblyum T.V., D'Ascenzo M., Deng W.-L., Ramos A.R., Alfano J.R., Cartinhour S., Chatterjee A.K., Delaney T.P., Lazarowitz S.G., Martin G.B., Schneider D.J., Tang X., Bender C.L., White O., Fraser C.M., Collmer A. ;
"The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000.";
Proc. Natl. Acad. Sci. U.S.A. 100:10181-10186(2003).
Web links
Official genome site(s):
http://pseudomonas-syringae.org/
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Pseudomonas&GLspecies=syringae&GLstrain=DC3000
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid223283%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Psyr_DC3000
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Pseudomonas_syringae.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p359_Pse_syrin
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=gps
 EBI Proteome Analysis page



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