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HAMAP: Prochlorococcus marinus (strain NATL2A) complete proteome

General information

Species:  Prochlorococcus marinus (strain NATL2A)
Species code: PROMT
Taxonomy: Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus (TaxID: 59920) [NEWT/ NCBI]
Description: Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.
This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I.
Properties: Presence of flagella: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of PROMT entries in the UniProt Knowledgebase: 2142 (308 in UniProtKB/Swiss-Prot + 1834 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    NATL2A
Genome structure
Chromosome EMBL accession number CP000095 (circular; 1,842,899 bp) (download entry) (download Genome Reviews).
References
[1] PubMed=18159947; [ NCBI , EBI , Israel , Japan ]
Kettler G.C., Martiny A.C., Huang K., Zucker J., Coleman M.L., Rodrigue S., Chen F., Lapidus A., Ferriera S., Johnson J., Steglich C., Church G.M., Richardson P., Chisholm S.W. ;
"Patterns and implications of gene gain and loss in the evolution of Prochlorococcus.";
PLoS Genet. 3:2515-2528(2007).
Web links
Official genome site(s):
http://web.mit.edu/chisholm/www/genomes/
http://genome.jgi-psf.org/finished_microbes/pro_n/pro_n.home.html
http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p13911_Pro_marin
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Prochlorococcus&GLspecies=marinus&GLstrain=NATL2A
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid59920%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Pmar_NATL2A
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntpm06
 EBI Proteome Analysis page



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