Species code:	PROM2
Taxonomy:	Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus (TaxID: 93060) [NEWT/ NCBI]
Description:	Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes. This HL-adapted strain was isolated in October 1992 by filter fractionation from surface waters of the equatorial Pacific Ocean (5m depth). It grows best at 25.5 degrees Celsius, has a chlorophyll b/a ration of 0.30 and belongs to high chlorophyll b/a clade II.
Properties:	Presence of flagella: No Interaction: No Number of membranes: 2 Number of inteins:0
Statistics:	Number of PROM2 entries in the UniProt Knowledgebase: 1984 (284 in UniProtKB/Swiss-Prot + 1700 in UniProtKB/TrEMBL)

Genome structure:	Chromosome EMBL accession number CP000825 (circular; 1,738,790 bp) (download entry) (download Genome Reviews).
Reference(s):	[1] PubMed=18159947; [ NCBI , EBI , Israel , Japan ] Kettler G.C., Martiny A.C., Huang K., Zucker J., Coleman M.L., Rodrigue S., Chen F., Lapidus A., Ferriera S., Johnson J., Steglich C., Church G.M., Richardson P., Chisholm S.W. ; "Patterns and implications of gene gain and loss in the evolution of Prochlorococcus."; PLoS Genet. 3:2515-2528(2007).
Web links:	Official genome site(s): http://chisholmlab.mit.edu/genomes/ http://genome.jgi-psf.org/finished_microbes/prom5/prom5.info.html Other web sites: CyanoBase: http://genome.kazusa.or.jp/cyanobase/P9215 Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=18633 Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=18633 GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Pmar_MIT9215 PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p18633_Pro_marin  EBI Proteome Analysis page

• Genome Proximity Viewer: This program displays the genes that are found in the genomic environment of a selected locus.
  
  
• Perform a BLAST search against all proteins from this proteome
  
  
• Download a file by FTP containing all UniProt Knowledgebase entries of this proteome
  • in UniProt Knowledgebase format
  • in FASTA format
  
  
• Retrieve set of characterized or identified proteins for this proteome
  
  
• Retrieve set of proteins with 3D structure for this proteome