ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us HAMAP Swiss-Prot
Search for

HAMAP: Mycobacterium sp. (strain MCS) complete proteome

General information

Species:  Mycobacterium sp. (strain MCS)
Species code: MYCSS
Taxonomy: Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium (TaxID: 164756) [NEWT/ NCBI]
Description: Mycobacterium MCS was isolated from soil in Libby, Montana, USA, the site of a former lumber and plywood mill. The soil is contaminated by polycyclic aromatic hydrocarbons (PAH), and MCS is one of several indigenous mycobacteria isolated from this site that are able to degrade high molecular weight PAH including benzo(a)pyrene and pyrene. It is a long rod, fast growing mycobacterium able to be used in soil bioremediation.
Properties: Presence of flagella: No
Interaction: No
Number of membranes: 1
Number of inteins: 1
Statistics: Number of MYCSS entries in the UniProt Knowledgebase: 5588 (284 in UniProtKB/Swiss-Prot + 5304 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    MCS
Genome structure:
• Chromosome EMBL accession number CP000384 (circular; 5,705,448 bp) (download entry) (download Genome Reviews).
• Plasmid pMCS1 EMBL accession number CP000385 (linear; 215,075 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Martinez M., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Miller C.D., Hughes J.E., Anderson A.J., Sims R.C., Richardson P. ;
"Complete sequence of chromosome of Mycobacterium sp. MCS.";
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
[2] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Martinez M., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Miller C.D., Hughes J.E., Anderson A.J., Sims R.C., Richardson P. ;
"Complete sequence of plasmid of Mycobacterium sp. MCS.";
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
Web links:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid164756%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Myco_MCS
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p15762_Myc_MCS
 EBI Proteome Analysis page



Tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us HAMAP Swiss-Prot
 Hosted by ch flag SIB Switzerland Mirror sites: Australia  Brazil  Canada  China  Korea
Search for