Search for
You are here: ExPASy CH  > Databases  > Around UniProtKB  > HAMAP

Home Proteomes Families Documents Downloads Links
HAMAP: Lactobacillus johnsonii complete proteome

General information

Species:  Lactobacillus johnsonii
Species code: LACJO
Taxonomy: Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus (TaxID: 33959) [NEWT/ NCBI]
Description: Lactobacillus johnsonii NCC 533 has been studied for its probiotic-associated activities such as immunomodulation, pathogen inhibition and epithelial cell attachment.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins:0
Statistics: Number of LACJO entries in the UniProt Knowledgebase: 1809 (292 in UniProtKB/Swiss-Prot + 1517 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    NCC 533
Genome structure:
Chromosome EMBL accession number AE017198 (circular; 1,992,676 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=14983040; [ NCBI , EBI , Israel , Japan ]
Pridmore R.D., Berger B., Desiere F., Vilanova D., Barretto C., Pittet A.-C., Zwahlen M.-C., Rouvet M., Altermann E., Barrangou R., Mollet B., Mercenier A., Klaenhammer T., Arigoni F., Schell M.A. ;
"The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533.";
Proc. Natl. Acad. Sci. U.S.A. 101:2512-2517(2004).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Lactobacillus&GLspecies=johnsonii&GLstrain=NCC533
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid257314%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Ljoh_NCC533
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Lactobacillus_johnsonii.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p9638_Lac_johns
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntlj01
 EBI Proteome Analysis page



Tools