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HAMAP: Idiomarina loihiensis complete proteome

General information

Species:  Idiomarina loihiensis
Species code: IDILO
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina (TaxID: 135577) [NEWT/ NCBI]
Description: Idiomarina loihiensis is a gamma-proteobacterium isolated recently from a hydrothermal vent at 1300-m depth on the Loihi submarine volcano in Hawaii. In contrast to obligate anaerobic vent hyperthermophiles, it inhabits partially oxygenated cold waters at the periphery of the vent and can survive a wide range of growth temperatures (from 4 degrees to 46 degrees Celsius) and salinities. I.loihiensis probably relies primarily on amino acid fermentation rather than on saccharolytic pathways for carbon and energy.
Properties: Presence of flagella: Yes
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of IDILO entries in the UniProt Knowledgebase: 2608 (408 in UniProtKB/Swiss-Prot + 2200 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    L2-TR / ATCC BAA-735 / DSM 15497
Genome structure:
Chromosome EMBL accession number AE017340 (circular; 2,839,318 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=15596722; [ NCBI , EBI , Israel , Japan ]
Hou S., Saw J.H., Lee K.S., Freitas T.A., Belisle C., Kawarabayasi Y., Donachie S.P., Pikina A., Galperin M.Y., Koonin E.V., Makarova K.S., Omelchenko M.V., Sorokin A., Wolf Y.I., Li Q.X., Keum Y.S., Campbell S., Denery J., Aizawa S., Shibata S., Malahoff A., Alam M. ;
"Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy.";
Proc. Natl. Acad. Sci. U.S.A. 101:18036-18041(2004).
Web links:
Official genome site(s):
http://www.hawaii.edu/microbiology/MO/L2TRsummary.htm
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Idiomarina&GLspecies=loihiensis&GLstrain=L2TR
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid283942%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Iloi_L2TR
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p10790_Idi_loihi
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntil01
 EBI Proteome Analysis page



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