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HAMAP: Deinococcus geothermalis (strain DSM 11300) complete proteome

General information

Species:  Deinococcus geothermalis (strain DSM 11300)
Species code: DEIGD
Taxonomy: Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus (TaxID: 319795) [NEWT/ NCBI]
Description: Deinococcus geothermalis is an extremely radiation resistant, moderately thermophilic bacterium closely related to the mesophilic Deinococcus radiodurans. D. geothermalis is remarkable not only for its extreme resistance to ionizing gamma irradiation, but also for its ability to grow at temperatures as high as 55 degrees C and in the presence of chronic irradiation. The organism was isolated from thermal springs at Agnano, Naples, Italy. D. geothermalis belongs to the bacterial family Deinococcaceae, currently comprised of eight distinct nonpathogenic radiation resistant species, of which Deinococcus radiodurans strain R1 is the most characterized. Characteristics support the prospective development of this thermophilic radiophile for bioremediation of radioactive mixed waste environments. Like D. radiodurans, D. geothermalis accumulates high intracellular Mn(II) concentrations, believed to be important to its extreme resistance phenotypes.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins: 1
Statistics: Number of DEIGD entries in the UniProt Knowledgebase: 2813 (259 in UniProtKB/Swiss-Prot + 2554 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    DSM 11300
Genome structure:
• Chromosome EMBL accession number CP000359 (circular; 2,467,205 bp) (download entry) (download Genome Reviews).
• Plasmid pDSM11300 EMBL accession number CP000358 (circular; 574,127 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Saunders E., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Daly M.J., Fredrickson J.K., Makarova K.S., Gaidamakova E.K., Zhai M., Richardson P. ;
"Complete sequence of chromosome 1 of Deinococcus geothermalis DSM 11300.";
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases.
[2] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Saunders E., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Daly M.J., Fredrickson J.K., Makarova K.S., Gaidamakova E.K., Zhai M., Richardson P. ;
"Complete sequence of plasmid 1 of Deinococcus geothermalis DSM 11300.";
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/deige/deige.home.html
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Deinococcus&GLspecies=geothermalis&GLsupStrain=DSM11300
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid319795%5Borgn%5D
GIB ( DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Dgeo_DSM11300
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p13423_Dei_geoth
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