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HAMAP: Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD)) complete proteome

General information

Species:  Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))
Species code: BURCM
Taxonomy: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex (TaxID: 339670) [NEWT/ NCBI]
Description: The Burkholderia cepacia complex (Bcc) comprises at least nine closely related species which can be correctly identified only by polyphasic taxonomic approaches. Members of the complex are among the most metabolically versatile microorganisms known as they grow on more than 200 organic compounds, fix N2 and carry multiple antibiotic resistances. They are involved in important processes such as biodegradation of pollutants, biocontrol of root diseases but some also cause disease in plants, animals and humans. Bcc strains are isolated from very different habitats, including soil, rhizospheres, streams and infected plants, animals and human tissues, especially lungs of cystic fibrosis (CF) patients. Bcc strains have large and plastic genomes comprised of multiple (2 to 4) replicons, which is thought to give them their ecological versatility (adapted from http://genome.jgi-psf.org/draft_microbes/bur08/bur08.home.html).
Properties: Presence of flagella: Yes
Human pathogen: not known
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of BURCM entries in the UniProt Knowledgebase: 6600 (390 in UniProtKB/Swiss-Prot + 6210 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC BAA-244 / AMMD
Genome structure:
• Chromosome 1 EMBL accession number CP000440 (circular; 3,556,545 bp) (download entry) (download Genome Reviews).
• Chromosome 2 EMBL accession number CP000441 (circular; 2,646,969 bp) (download entry) (download Genome Reviews).
• Chromosome 3 EMBL accession number CP000442 (circular; 1,281,472 bp) (download entry) (download Genome Reviews).
• Plasmid pAMMD-1 EMBL accession number CP000443 (circular; 43,581 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P. ;
"Complete sequence of chromosome 1 of Burkholderia cepacia AMMD.";
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[2] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P. ;
"Complete sequence of chromosome 2 of Burkholderia cepacia AMMD.";
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[3] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P. ;
"Complete sequence of chromosome 3 of Burkholderia cepacia AMMD.";
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[4] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Bruce D., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Parke J., Coenye T., Konstantinidis K., Ramette A., Tiedje J., Richardson P. ;
"Complete sequence of plasmid 1 of Burkholderia cepacia AMMD.";
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/buram/buram.home.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid339670%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Bcep_AMMD
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p13490_Bur_cepac
 EBI Proteome Analysis page



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