Species code:	ACISJ
Taxonomy:	Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax (TaxID: 232721) [NEWT/ NCBI]
Description:	Acidovorax sp. is an aerobic mesophillic Gram-negative bacterium phylogenetically associated with the beta subdivision of the Proteobacteria. It is formerly known as Pseudomonas sp. JS42. This nitroaromatic compound-degrader organism was isolated from nitrobenzene-contaminated sediment and is capable of using 2-nitrotolulene as a sole carbon and energy source. 2-nitrotolulene, a nitroaromatic compound, is used in the manufacture of dyes, pigments and explosives. Nitroaromatic compounds, which contain an aromatic ring with one or more nitro groups attached, are a significant contaminant in industrial soils. Acidovorax sp. JS42 degrades 2-nitrotolulene by first removing the nitro moiety producing 3-methylcatechol. The enzyme involved in this process, 2-nitrotolulene dioxygenase, has been purified and characterized. The genome sequence of this organism will provide information about the gene content of a free-living species with a catabolic capacity relevant to bioremediation of nitroaromatic-contaminated soils.
Properties:	Presence of flagella: Yes Interaction: No Number of membranes: 2 Number of inteins:0
Statistics:	Number of ACISJ entries in the UniProt Knowledgebase: 4045 (291 in UniProtKB/Swiss-Prot + 3754 in UniProtKB/TrEMBL)

Genome structure:	• Chromosome EMBL accession number CP000539 (circular; 4,448,856 bp) (download entry) (download Genome Reviews). • Plasmid pAOVO01 EMBL accession number CP000540 (circular; 72,689 bp) (download entry) (download Genome Reviews). • Plasmid pAOVO02 EMBL accession number CP000541 (circular; 63,609 bp) (download entry) (download Genome Reviews).
Reference(s):	[1] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Stahl D., Richardson P. ; "Complete sequence of chromosome 1 of Acidovorax sp. JS42."; Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases. [2] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Stahl D., Richardson P. ; "Complete sequence of plasmid 1 pAOVO01 of Acidovorax sp. JS42."; Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases. [3] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Stahl D., Richardson P. ; "Complete sequence of plasmid 2 pAOVO02 of Acidovorax sp. JS42."; Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
Web links:	Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid232721%5Borgn%5D Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=15685 GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Acid_JS42 PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p15685_Aci_sp  EBI Proteome Analysis page

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