Secondary Structure Prediction System
SCRATCH is a server for predicting protein tertiary structure and structural features. The SCRATCH software suite includes predictors for secondary structure, relative solvent accessibility, disordered regions, domains, disulfide bridges, single mutation stability, residue contacts versus average, individual residue contacts and tertiary structure.
Secondary structure prediction.
Classification and Secondary Structure Prediction of Membrane Proteins.
TMHMM is a membrane protein topology prediction method based on a hidden Markov model (HMM). It predicts transmembrane helices in proteins.
The TMpred program makes a prediction of membrane-spanning regions and their orientation. The algorithm is based on the statistical analysis of TMbase, a database of naturally occurring transmembrane proteins
UniCarbDB is a platform for presenting glycan structures and fragment data characterised by LC-MS/MS strategies. The database is annotated with high-quality datasets and is designed to extend and reinforce those standards and ontologies developed by existing glycomics databases.
UniProtKB/Swiss-Prot is the manually annotated component of UniProtKB (produced by the UniProt consortium). It contains manually-annotated (reviewed) records with information extracted from the literature and curator-evaluated computational analysis.
, disease mutation
, enzyme (catalytic activity)
, family database
, functional annotation
, gene nomenclature
, physico-chemical property
, post-translational modification (PTM)
, protein data bank (PDB)
, protein domain
, protein family
, protein function
, protein nomenclature
, protein sequence analysis (primary structure)
, protein variation (variant)
, quaternary structure
, secondary structure
, sequence alignment
, sequence analysis
, tertiary structure
, topology prediction
, transmembrane (trans-membrane)